Detail information of GWHGAAEX001968/evm.TU.scaffold_114.102
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0627 | 5.00E-71 | Heat shock transcription factor |
| nr | gi|695067986|ref|XP_009380920.1| | 6.87E-78 | PREDICTED: heat stress transcription factor B-4c-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9C635|HSFB4_ARATH | 1.00E-71 | Heat stress transcription factor B-4 |
| trEMBL | tr|M0U0J5|M0U0J5_MUSAM | 2.00E-76 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P15370_001} |
| TAIR | AT1G46264 | 5.00E-71 | heat shock transcription factor B4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000115 | 3054149 | 3055001 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001968
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00447.16 | HSF_DNA-bind | 19 | 132 | 2.00E-25 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HSF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.530 |
| SRR2545915 | Juvenile tuber | 5.380 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.440 |
| SRR5643514 | five period of Gastrodia elata | 8.340 | |
| SRR5643515 | five period of Gastrodia elata | 8.690 | |
| SRR5643524 | five period of Gastrodia elata | 6.770 | |
| SRR5643525 | five period of Gastrodia elata | 32.950 | |
| SRR5643528 | five period of Gastrodia elata | 22.480 | |
| SRR5643658 | five period of Gastrodia elata | 46.760 | |
| SRR5643659 | five period of Gastrodia elata | 12.560 | |
| SRR5643660 | five period of Gastrodia elata | 8.800 | |
| SRR5643661 | five period of Gastrodia elata | 9.340 | |
| SRR5643662 | five period of Gastrodia elata | 1.490 | |
| SRR5643663 | five period of Gastrodia elata | 0.760 | |
| SRR5643664 | five period of Gastrodia elata | 3.310 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.770 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.630 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.380 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.960 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 22.820 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 22.540 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 20.210 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 24.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.570 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.940 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.490 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.490 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.34 |
| Juven | Juvenile tuber | 3.35 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 103.09 | |
| Mother_Juven | Mother tuber of Juvenile | 46.21 |