Detail information of GWHGAAEX001970/evm.TU.scaffold_114.104


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|57641174|ref|YP_183652.1|2.00E-76peptide chain release factor 1 [Thermococcus kodakarensis KOD1]
KOGKOG06880Peptide chain release factor 1 (eRF1)
nrgi|743801778|ref|XP_010926438.1|0PREDICTED: eukaryotic peptide chain release factor subunit 1-3-like [Elaeis guineensis]
Swissprottr|P35614|ERF1Z_ARATH0Eukaryotic peptide chain release factor subunit 1-3
trEMBLtr|A0A061EL41|A0A061EL41_THECC0Eukaryotic release factor 1-3 {ECO:0000313|EMBL:EOY03029.1}
TAIRAT3G266180eukaryotic release factor 1-3

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000011530714223073173-
Transcript Sequence

Network for GWHGAAEX001970

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03463.14eRF1_1171389.20E-20
PF03464.14eRF1_21442776.50E-43
PF03465.14eRF1_32814187.70E-38
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03265ETF1, ERF1 mRNA surveillance pathway map03015

Gene Ontology

GO term OntologyName
GO:0006415Biological Processtranslational termination
GO:0003747Molecular Functiontranslation release factor activity
GO:0005737Cellular Componentcytoplasm

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms76.760
SRR2545915Juvenile tuber70.270
SRP108465SRR5643513five period of Gastrodia elata64.860
SRR5643514five period of Gastrodia elata65.540
SRR5643515five period of Gastrodia elata61.800
SRR5643524five period of Gastrodia elata63.030
SRR5643525five period of Gastrodia elata60.800
SRR5643528five period of Gastrodia elata69.270
SRR5643658five period of Gastrodia elata72.310
SRR5643659five period of Gastrodia elata81.220
SRR5643660five period of Gastrodia elata100.930
SRR5643661five period of Gastrodia elata86.380
SRR5643662five period of Gastrodia elata89.710
SRR5643663five period of Gastrodia elata84.580
SRR5643664five period of Gastrodia elata96.880
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_193.640
SRR6049655Rhizomagastrodiae_C368-T10_good_192.350
SRR6049656Rhizomagastrodiae_C368-T07_good_179.990
SRR6049657Rhizomagastrodiae_C368-T07_good_1106.670
SRR6049658Rhizomagastrodiae_C368-T04_good_183.440
SRR6049659Rhizomagastrodiae_C368-T04_good_1107.720
SRR6049660Rhizomagastrodiae_C368-T01_good_194.170
SRR6049661Rhizomagastrodiae_C368-T04_good_186.470
SRR6049662Rhizomagastrodiae_C368-T01_good_187.520
SRR6049663Rhizomagastrodiae_C368-T01_good_189.750
SRR6049664Rhizomagastrodiae_C368-T10_good_184.650
SRR6049665Rhizomagastrodiae_C368-T10_good_184.650
SRP279888GastroGastrodia elata tuber 94.56
JuvenJuvenile tuber100.10
Mother_GastroMother tuber of Gastrodia elata 70.12
Mother_JuvenMother tuber of Juvenile 66.77