Detail information of GWHGAAEX001974/evm.TU.scaffold_114.108


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG45670GTPase-activating protein
nrgi|743765640|ref|XP_010913048.1|0PREDICTED: TBC1 domain family member 13-like isoform X1 [Elaeis guineensis]
trEMBLtr|D7SNI7|D7SNI7_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI17216.3}
TAIRAT1G048300Ypt/Rab-GAP domain of gyp1p superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000011531437013149041-
Transcript Sequence

Network for GWHGAAEX001974

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00566.17RabGAP-TBC2114034.10E-40
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms50.920
SRR2545915Juvenile tuber34.570
SRP108465SRR5643513five period of Gastrodia elata17.350
SRR5643514five period of Gastrodia elata14.880
SRR5643515five period of Gastrodia elata11.360
SRR5643524five period of Gastrodia elata13.740
SRR5643525five period of Gastrodia elata17.200
SRR5643528five period of Gastrodia elata15.590
SRR5643658five period of Gastrodia elata20.330
SRR5643659five period of Gastrodia elata16.000
SRR5643660five period of Gastrodia elata19.600
SRR5643661five period of Gastrodia elata16.600
SRR5643662five period of Gastrodia elata18.750
SRR5643663five period of Gastrodia elata19.000
SRR5643664five period of Gastrodia elata21.890
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_133.760
SRR6049655Rhizomagastrodiae_C368-T10_good_144.830
SRR6049656Rhizomagastrodiae_C368-T07_good_130.460
SRR6049657Rhizomagastrodiae_C368-T07_good_139.740
SRR6049658Rhizomagastrodiae_C368-T04_good_144.500
SRR6049659Rhizomagastrodiae_C368-T04_good_146.630
SRR6049660Rhizomagastrodiae_C368-T01_good_134.740
SRR6049661Rhizomagastrodiae_C368-T04_good_137.810
SRR6049662Rhizomagastrodiae_C368-T01_good_123.580
SRR6049663Rhizomagastrodiae_C368-T01_good_124.860
SRR6049664Rhizomagastrodiae_C368-T10_good_125.330
SRR6049665Rhizomagastrodiae_C368-T10_good_125.330
SRP279888GastroGastrodia elata tuber 22.67
JuvenJuvenile tuber34.43
Mother_GastroMother tuber of Gastrodia elata 19.62
Mother_JuvenMother tuber of Juvenile 32.45