Detail information of GWHGAAEX001981/evm.TU.scaffold_114.117
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|375149879|ref|YP_005012320.1| | 1.00E-79 | Alpha,alpha-trehalase [Niastella koreensis GR20-10] |
| KOG | KOG0602 | 0 | Neutral trehalase |
| nr | gi|672159587|ref|XP_008799558.1| | 0 | PREDICTED: probable trehalase isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q9FWC1|TRE_ORYSJ | 0 | Probable trehalase |
| trEMBL | tr|M0SRU6|M0SRU6_MUSAM | 0 | Trehalase {ECO:0000256|RuleBase:RU361180} |
| TAIR | AT4G24040 | 0 | trehalase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000115 | 3291958 | 3299495 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001981
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01204.17 | Trehalase | 97 | 611 | 1.90E-159 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01194 | TREH, treA, treF | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Starch and sucrose metabolism | map00500 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005991 | Biological Process | trehalose metabolic process |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0004555 | Molecular Function | alpha,alpha-trehalase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.080 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.980 |
| SRR5643514 | five period of Gastrodia elata | 0.580 | |
| SRR5643515 | five period of Gastrodia elata | 1.840 | |
| SRR5643524 | five period of Gastrodia elata | 0.320 | |
| SRR5643525 | five period of Gastrodia elata | 0.070 | |
| SRR5643528 | five period of Gastrodia elata | 0.230 | |
| SRR5643658 | five period of Gastrodia elata | 0.150 | |
| SRR5643659 | five period of Gastrodia elata | 0.350 | |
| SRR5643660 | five period of Gastrodia elata | 0.140 | |
| SRR5643661 | five period of Gastrodia elata | 0.740 | |
| SRR5643662 | five period of Gastrodia elata | 0.550 | |
| SRR5643663 | five period of Gastrodia elata | 0.260 | |
| SRR5643664 | five period of Gastrodia elata | 0.420 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.210 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.810 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.460 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.970 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.410 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.940 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.810 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.380 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.390 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.460 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.980 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.980 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.08 |
| Juven | Juvenile tuber | 0.02 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.47 | |
| Mother_Juven | Mother tuber of Juvenile | 0.31 |