Detail information of GWHGAAEX001982/evm.TU.scaffold_115.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|333911242|ref|YP_004484975.1|5.00E-132translation initiation factor 2 subunit gamma [Methanotorris igneus Kol 5]
KOGKOG04660Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase)
nrgi|743815236|ref|XP_010930281.1|0PREDICTED: eukaryotic translation initiation factor 2 subunit gamma-like [Elaeis guineensis]
Swissprottr|Q9TJQ8|EFTU_PROWI4.00E-21Elongation factor Tu, plastid
trEMBLtr|J3NEU2|J3NEU2_ORYBR0Uncharacterized protein {ECO:0000313|EnsemblPlants:OB12G25000.1}
TAIRAT1G041700eukaryotic translation initiation factor 2 gamma subunit

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000116822323315+
Transcript Sequence

Network for GWHGAAEX001982

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00009.26GTP_EFTU322364.00E-24
PF03144.24GTP_EFTU_D22683501.20E-08
PF09173.10eIF2_C3624514.80E-36
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03242EIF2S3 RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0005525Molecular FunctionGTP binding
GO:0003924Molecular FunctionGTPase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms39.990
SRR2545915Juvenile tuber42.490
SRP108465SRR5643513five period of Gastrodia elata59.140
SRR5643514five period of Gastrodia elata62.520
SRR5643515five period of Gastrodia elata58.500
SRR5643524five period of Gastrodia elata58.170
SRR5643525five period of Gastrodia elata53.780
SRR5643528five period of Gastrodia elata70.510
SRR5643658five period of Gastrodia elata51.500
SRR5643659five period of Gastrodia elata78.930
SRR5643660five period of Gastrodia elata82.470
SRR5643661five period of Gastrodia elata74.920
SRR5643662five period of Gastrodia elata71.600
SRR5643663five period of Gastrodia elata69.130
SRR5643664five period of Gastrodia elata59.480
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_161.520
SRR6049655Rhizomagastrodiae_C368-T10_good_158.150
SRR6049656Rhizomagastrodiae_C368-T07_good_171.230
SRR6049657Rhizomagastrodiae_C368-T07_good_148.940
SRR6049658Rhizomagastrodiae_C368-T04_good_152.630
SRR6049659Rhizomagastrodiae_C368-T04_good_144.210
SRR6049660Rhizomagastrodiae_C368-T01_good_152.730
SRR6049661Rhizomagastrodiae_C368-T04_good_151.940
SRR6049662Rhizomagastrodiae_C368-T01_good_194.390
SRR6049663Rhizomagastrodiae_C368-T01_good_177.160
SRR6049664Rhizomagastrodiae_C368-T10_good_193.450
SRR6049665Rhizomagastrodiae_C368-T10_good_193.450
SRP279888GastroGastrodia elata tuber 73.90
JuvenJuvenile tuber55.86
Mother_GastroMother tuber of Gastrodia elata 55.89
Mother_JuvenMother tuber of Juvenile 58.38