Gene detail

Detail information of GWHGAAEX001988/evm.TU.scaffold_115.7

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|308050066\|ref\|YP_003913632.1\|	3.00E-99	catalytic domain of components of various dehydrogenase complexes [Ferrimonas balearica DSM 9799]
KOG	KOG0558	7.00E-177	Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit)
nr	gi\|743844555\|ref\|XP_010938376.1\|	0	PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q9M7Z1\|ODB2_ARATH	2.00E-177	Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial (Precursor)
trEMBL	tr\|M0REQ1\|M0REQ1_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P02240_001}
TAIR	AT3G06850	7.00E-177	2-oxoacid dehydrogenases acyltransferase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000116	137737	206571	+

Transcript Sequence
>GWHTAAEX001988 GTTCGATCCACGAGCATGGGTTTATCGCTAAGAGAGAATGGAGATGACTCGCGGTAATGTATCTAGCATTACCAAGATCATAAAAAGTCGAACAAAATGGCGGTAATTGATAGTTGGTGATTTGTACGCAAACAAAATGCGGGTTAACACTTACGATTTTTCGTTGCATCTACATTATTCACTAATTGCGAAGCAGAAATCGGAAAGTTTTCCCAGCGAAAAAAATTCCAAGTCGCTTCAACGATGACGGCGAGGTTGAATCTGCGTTTGAGGCGGCTTGTGAGCACGTGTTTACTTTCGATTTCTGAACGGCCGCCGTCTACGCGAGCTCTGGCACTGGCGCCTCCACCACCAGTAAAATCTATGCTGCTGCCCCTCTCTCGGAGGAACACTTCAGTTTACCCTAACGTCTTCCAATTTAGGGTTTCGTGTCAAGCATGGAGCCAGCGCTACTTCTCGATTCAGGTATTTGTTGATTTGCCATCTGGGAACTTGGTGGAAGTGCCGCTCGCCCAGACCGGAGAGGGCATTGCAGAGTGCGAGCTTCTCAAGTGGTTTGTGAAAGAGGGGGACAGTGTAGATGAGTTTCAGCCTCTCTGTGAAGTTCAAAGCGACAAGGCAACTATAGAAATTACAAGCCGGTTCAAAGGAGAAGTTAAACAGATCCTCTATTTTCCTGGTGATATTGTGAAGGTTGGTGAGACTATGTTGAAGATTCTTATTAATGAAACGGAGGGCCCTTTAATTTCTCAGGATGGTGGTTGTGTGGCATCTTCTAATTTGCAGATGAATCAATCAGAACCTGAAGCATCATTAAATGATCAACGAATTCTGGGGGGCGTTTTAGCCACTCCTTCTGTAAGGCATCTTGCAAAGCAGTATGGCATAAATATAAATGATATCAGTGGATCAGGTAAAGATGGAAGAGTTTTGAAGGAAGATGTCCTAAATTACACTGTTAGGAAAGTCATTGTCAAAGAAATGCCTTTCCTGTCACCTGCTTGTGATGAGAATGCAGATTCTTTTCAAAATAGGGAAGCAGGATGTATGGCTTATATGCAACGAGGGAACTACGAGGACAAAGTTCTTCCTATCAGGGGATTTAAGAGGTCTATGATCAAATCAATGTCGATGGCTGCAAAAGTTCCCCATTTTTATTTTGTGGAAGAGATAAAGTGCAATGCTCTTGTCAAGCTTAAAGTAGCCTTTCAAAATGCAAACATCGACCCTCATGTCAAACACACATTTCTTCCATTTCTGATTAAGTCTTTATCTATGGCATTGGACAAATATCCTCTGATGAATAGCTCGTTCAATGAAGATTCCAATGAAGTTACTCTGAAAGGGTGTCACAACATTGGGGTTGCCATGGATACTCCATTTGGTTTAGTTGTGCCAACTATAAAGAAGGTTCAGTCGCTGTCAATAATGGAGGTTACAAAAGAACTGGCAAGGCTCCAACAACTGGCAGTATCCAACAAGTTAAATGCTGAAGATATTTCTTGGGGAACAATAACCATTACCAACATTGGGTCCATAGGTGGGAAGTTTGGTTCCCCAATTCTAAATTTACCGGAGGCCTCCATTATTGCAATCGGGAAGATTCAGAAACTTCCCAGATTCGCAGAAGATGACACTGTATATCCAGCATATGTTGCTAATGTGGCAATTGGGGCCGACCATAGGATTGTTGACGGCGCCATTGTGGCCAGATTTTGCAACGAATGGAAGGCTCTGATTGAAAAGCCGGAGCTTCTCTTATTGCACATGCGGTGAGCGCTGACTGTTTGATTGGCTAATCTATTAAACGCATATGAGGATTTGCTGCCAGTCTCCTTAATGTCATGTATTTGTAATAATAATATGATATATTCTTATCTATAGTTCATTAGGATATCTCTATAGGTCATTAGGTCAATATTTATGCCTTTTAAATATTGCTCAATTTAATAAAAAAACGAATATGCTGTCAGATAATTCCTTGAAATTTATAGTGATAAATATTTGAACATACTTTAGGAAATTAATAATATAATAATAAACTTTATATTTGAATATATTTAAGAGAAATAAT

Network for GWHGAAEX001988

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00364.21	Biotin_lipoyl	86	158	3.20E-18
PF02817.16	E3_binding	200	235	2.30E-16
PF00198.22	2-oxoacid_dh	278	507	5.70E-72

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09699	DBT, bkdB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of antibiotics	map01130
		Propanoate metabolism	map00640
		Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0016746	Molecular Function	transferase activity, transferring acyl groups

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	26.140
SRP064423	SRR2545915	Juvenile tuber	21.330
SRP108465	SRR5643513	five period of Gastrodia elata	16.030
	SRR5643514	five period of Gastrodia elata	19.890
	SRR5643515	five period of Gastrodia elata	17.520
	SRR5643524	five period of Gastrodia elata	20.980
	SRR5643525	five period of Gastrodia elata	20.430
	SRR5643528	five period of Gastrodia elata	30.430
	SRR5643658	five period of Gastrodia elata	24.430
	SRR5643659	five period of Gastrodia elata	21.240
	SRR5643660	five period of Gastrodia elata	20.740
	SRR5643661	five period of Gastrodia elata	19.630
	SRR5643662	five period of Gastrodia elata	22.680
	SRR5643663	five period of Gastrodia elata	22.640
	SRR5643664	five period of Gastrodia elata	20.850
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	15.400
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	11.600
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	16.300
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	15.240
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	13.190
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	15.120
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	13.980
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	13.380
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	16.730
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	16.150
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	18.230
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	18.230
SRP279888	Gastro	Gastrodia elata tuber	13.19
	Juven	Juvenile tuber	12.99
	Mother_Gastro	Mother tuber of Gastrodia elata	13.74
	Mother_Juven	Mother tuber of Juvenile	15.69