Detail information of GWHGAAEX001989/evm.TU.scaffold_115.8
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|148656762|ref|YP_001276967.1| | 8.00E-76 | lycopene cyclase family protein [Roseiflexus sp. RS-1] |
| nr | gi|743764235|ref|XP_010912323.1| | 0 | PREDICTED: capsanthin/capsorubin synthase, chromoplast-like [Elaeis guineensis] |
| Swissprot | tr|Q9SEA0|CCS_CITSI | 0 | Capsanthin/capsorubin synthase, chromoplast (Precursor) |
| trEMBL | tr|J9PDV1|J9PDV1_9LILI | 0 | Capsanthin/capsorubin synthase {ECO:0000313|EMBL:ADV31551.1} |
| TAIR | AT3G10230 | 2.00E-153 | lycopene cyclase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000116 | 208663 | 210597 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001989
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05834.11 | Lycopene_cycl | 66 | 460 | 3.50E-113 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14593 | CCS1 | Carotenoid biosynthesis | map00906 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016117 | Biological Process | carotenoid biosynthetic process |
| GO:0016705 | Molecular Function | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 15.140 |
| SRR2545915 | Juvenile tuber | 11.090 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 24.530 |
| SRR5643514 | five period of Gastrodia elata | 23.130 | |
| SRR5643515 | five period of Gastrodia elata | 22.720 | |
| SRR5643524 | five period of Gastrodia elata | 20.470 | |
| SRR5643525 | five period of Gastrodia elata | 14.630 | |
| SRR5643528 | five period of Gastrodia elata | 11.050 | |
| SRR5643658 | five period of Gastrodia elata | 13.350 | |
| SRR5643659 | five period of Gastrodia elata | 34.980 | |
| SRR5643660 | five period of Gastrodia elata | 31.680 | |
| SRR5643661 | five period of Gastrodia elata | 38.070 | |
| SRR5643662 | five period of Gastrodia elata | 59.880 | |
| SRR5643663 | five period of Gastrodia elata | 50.120 | |
| SRR5643664 | five period of Gastrodia elata | 73.450 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 30.190 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 34.240 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 24.920 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 33.300 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 29.410 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 33.250 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 24.970 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 32.130 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 20.560 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.570 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 21.280 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 21.280 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 28.86 |
| Juven | Juvenile tuber | 20.33 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 28.97 | |
| Mother_Juven | Mother tuber of Juvenile | 35.32 |