Detail information of GWHGAAEX001994/evm.TU.scaffold_115.15
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|390944042|ref|YP_006407803.1| | 3.00E-51 | pectin methylesterase [Belliella baltica DSM 15883] |
| nr | gi|672143771|ref|XP_008795768.1| | 0 | PREDICTED: pectinesterase-like [Phoenix dactylifera] |
| Swissprot | tr|O81301|PME40_ARATH | 9.00E-177 | Pectinesterase 40 (Precursor) |
| trEMBL | tr|M1RX38|M1RX38_MUSAC | 0 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
| TAIR | AT4G02320 | 3.00E-176 | Plant invertase/pectin methylesterase inhibitor superfamily |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000116 | 321946 | 325796 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001994
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04043.14 | PMEI | 29 | 179 | 1.20E-24 |
| PF01095.18 | Pectinesterase | 231 | 528 | 4.70E-142 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01051 | E3.1.1.11 | Metabolic pathways | map01100 |
| Pentose and glucuronate interconversions | map00040 | ||
| Two-component system | map02020 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0042545 | Biological Process | cell wall modification |
| GO:0030599 | Molecular Function | pectinesterase activity |
| GO:0004857 | Molecular Function | enzyme inhibitor activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.980 |
| SRR2545915 | Juvenile tuber | 14.970 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 35.810 |
| SRR5643514 | five period of Gastrodia elata | 45.550 | |
| SRR5643515 | five period of Gastrodia elata | 40.330 | |
| SRR5643524 | five period of Gastrodia elata | 41.780 | |
| SRR5643525 | five period of Gastrodia elata | 11.790 | |
| SRR5643528 | five period of Gastrodia elata | 11.980 | |
| SRR5643658 | five period of Gastrodia elata | 6.150 | |
| SRR5643659 | five period of Gastrodia elata | 104.280 | |
| SRR5643660 | five period of Gastrodia elata | 72.720 | |
| SRR5643661 | five period of Gastrodia elata | 72.590 | |
| SRR5643662 | five period of Gastrodia elata | 36.320 | |
| SRR5643663 | five period of Gastrodia elata | 65.860 | |
| SRR5643664 | five period of Gastrodia elata | 33.220 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 31.690 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 19.610 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 31.030 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 34.700 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 18.100 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.240 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 16.450 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 34.630 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 37.170 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 26.200 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 26.970 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 26.970 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 25.14 |
| Juven | Juvenile tuber | 14.27 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.51 | |
| Mother_Juven | Mother tuber of Juvenile | 6.30 |