Detail information of GWHGAAEX001995/evm.TU.scaffold_115.16
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 1.00E-144 | FOG: PPR repeat |
| nr | gi|672141365|ref|XP_008794510.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Phoenix dactylifera] |
| Swissprot | tr|Q9SJZ3|PP169_ARATH | 3.00E-145 | Pentatricopeptide repeat-containing protein At2g22410, mitochondrial (Precursor) |
| trEMBL | tr|C5X7R4|C5X7R4_SORBI | 0 | Putative uncharacterized protein Sb02g032350 {ECO:0000313|EMBL:EER99329.1} |
| TAIR | AT2G22410 | 1.00E-144 | SLOW GROWTH 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000116 | 326876 | 328804 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001995
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 184 | 232 | 8.00E-08 |
| PF01535.19 | PPR | 261 | 287 | 0.011 |
| PF13041.5 | PPR_2 | 318 | 365 | 7.10E-11 |
| PF13041.5 | PPR_2 | 419 | 467 | 6.00E-09 |
| PF01535.19 | PPR | 495 | 519 | 0.21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.710 |
| SRR2545915 | Juvenile tuber | 5.470 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.540 |
| SRR5643514 | five period of Gastrodia elata | 3.400 | |
| SRR5643515 | five period of Gastrodia elata | 3.600 | |
| SRR5643524 | five period of Gastrodia elata | 2.080 | |
| SRR5643525 | five period of Gastrodia elata | 7.050 | |
| SRR5643528 | five period of Gastrodia elata | 5.460 | |
| SRR5643658 | five period of Gastrodia elata | 8.530 | |
| SRR5643659 | five period of Gastrodia elata | 6.050 | |
| SRR5643660 | five period of Gastrodia elata | 7.380 | |
| SRR5643661 | five period of Gastrodia elata | 6.660 | |
| SRR5643662 | five period of Gastrodia elata | 6.820 | |
| SRR5643663 | five period of Gastrodia elata | 8.780 | |
| SRR5643664 | five period of Gastrodia elata | 6.990 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.580 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.330 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.870 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.850 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.510 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.620 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.770 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.270 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.020 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.800 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.420 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.420 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.56 |
| Juven | Juvenile tuber | 12.91 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.14 | |
| Mother_Juven | Mother tuber of Juvenile | 7.07 |