Detail information of GWHGAAEX001997/evm.TU.scaffold_115.17


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16967.00E-2560s ribosomal protein L19
nrgi|729377170|ref|XP_010549573.1|7.24E-21PREDICTED: 60S ribosomal protein L19-3-like, partial [Tarenaya hassleriana]
Swissprottr|Q9LUQ6|RL192_ARATH2.00E-2560S ribosomal protein L19-2
trEMBLtr|H9MBV1|H9MBV1_PINRA5.00E-21Uncharacterized protein {ECO:0000313|EMBL:AEW08597.1} (Fragment)
TAIRAT3G167807.00E-25Ribosomal protein L19e family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000116330777330959-
Transcript Sequence

Network for GWHGAAEX001997

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01280.19Ribosomal_L19e1504.30E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02885RP-L19e, RPL19 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.000
SRR2545915Juvenile tuber3.330
SRP108465SRR5643513five period of Gastrodia elata0.000
SRR5643514five period of Gastrodia elata0.000
SRR5643515five period of Gastrodia elata75.330
SRR5643524five period of Gastrodia elata0.000
SRR5643525five period of Gastrodia elata257.180
SRR5643528five period of Gastrodia elata32.540
SRR5643658five period of Gastrodia elata28.270
SRR5643659five period of Gastrodia elata61.380
SRR5643660five period of Gastrodia elata0.000
SRR5643661five period of Gastrodia elata0.000
SRR5643662five period of Gastrodia elata0.000
SRR5643663five period of Gastrodia elata19.180
SRR5643664five period of Gastrodia elata54.420
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_10.000
SRR6049655Rhizomagastrodiae_C368-T10_good_10.000
SRR6049656Rhizomagastrodiae_C368-T07_good_10.000
SRR6049657Rhizomagastrodiae_C368-T07_good_10.000
SRR6049658Rhizomagastrodiae_C368-T04_good_111.080
SRR6049659Rhizomagastrodiae_C368-T04_good_10.000
SRR6049660Rhizomagastrodiae_C368-T01_good_10.000
SRR6049661Rhizomagastrodiae_C368-T04_good_10.000
SRR6049662Rhizomagastrodiae_C368-T01_good_10.000
SRR6049663Rhizomagastrodiae_C368-T01_good_10.000
SRR6049664Rhizomagastrodiae_C368-T10_good_10.000
SRR6049665Rhizomagastrodiae_C368-T10_good_10.000
SRP279888GastroGastrodia elata tuber 92.16
JuvenJuvenile tuber0.00
Mother_GastroMother tuber of Gastrodia elata 68.48
Mother_JuvenMother tuber of Juvenile 92.82