Gene detail

Detail information of GWHGAAEX002000/evm.TU.scaffold_115.21

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG4748	Subunit of Golgi mannosyltransferase complex
nr	gi\|672143837\|ref\|XP_008795804.1\|	PREDICTED: putative glycosyltransferase 2 [Phoenix dactylifera]
Swissprot	tr\|O22775\|XXT2_ARATH	Xyloglucan 6-xylosyltransferase 2
trEMBL	tr\|A5BRM5\|A5BRM5_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN59912.1}
TAIR	AT4G02500	UDP-xylosyltransferase 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000116	369561	373295	-

Transcript Sequence
>GWHTAAEX002000 AAAATTTACTTGTGATTTATATGTATAATTTACCGACATCCTATTGACATCCAGATTCCAGCACACGACGATTTCAACAGCCATTACAAGACCCCAGCCCATACTTAGCTGTCCACACCCCCCCCCTTCCAATCGACGCAGCGCGATCCCTTTTGCTTCTCATCCAGCTGAAGTATCTGGATTTTCCTCTCTTGCAATCAATAATCTCTCCTCGGAAGATCTCAATTATTTAGCGGAGAGGAGGAGTGATCGCTGCTGTTCGCCAGAAATGTGGGAACGGTGCTTGGACGAGCGCCGCGCGCGCAAGATCCAGCGAGCTTTCCGCAAAGGAAGGCTGACCTTTCTGTGCCTATTCATGACCATCATCGTCCTCCGCAGCACTCTCGGCGCGGGGAAATTCGGAACGCCGGAGCAGGATTTCAGCATCATCAGCCATCGTCTACACCCCGGCCATCACCGCGTCCTCATTGAGCAGCATTCATCCACGTCTTCCTCTTCCGCCGCAGACGGAATCACCAGCAACGAGGGAGATGAGTCGTCCCCGGATCCCTCCAAACCTTACTCCCTAGGGCCTAAAATATCCGATTGGGACAAGCAGCGCGCTCGATGGCACGAATCCCACCCCGAAACCCCAAATTTCCTAACCGCGACGAAGCCGCGCGTTCTGCTCGTGACCGGATCTTCCCCCAAGCCCTGCGAGAACCCCGTCGGAGACCATTACCTCTTAAAATCGATCAAGAACAAGATCGACTACTGCCGCGTTCACGGCATCGAGATCTTCTACAACTTTGCGCTTCTCGATGCCGAGATGGCCGGATTCTGGGCCAAGCTACCTCTCATTCGCAAGCTCCTCATCTCCCACCCTGAGATCGAGTTCCTCTGGTGGATGGATTCCGACGCCATGTTCACCGACATGGCCTTCGAGCTCCCATGGGAGCGCTACGCGGCTTACAATCTCGTGATGCACGGCTGGAACGAGATGGTCTACAACGATCGCAACTGGATCGGGCTCAACACCGGAAGCTTCCTCCTCCGAAACTGTCAATGGTCCCTCGATCTCCTCGACGCTTGGGCTCCCATGGGCCCGAAGGGCAAAATCCGCGAGGACGCCGGGAAGATCCTCACCCAGTTTTTAAAAGACCGGCCGGTGTTCGAGGCCGACGATCAGTCCGCCATGGTCTACCTCCTCGTCACCCAGAAGGATCTGTGGGCCGACAAGGTCTATCTGGAAAGCGCGTATTATCTCCATGGCTATTGGGGAATTCTCGTGGATCGGTACGAGGAGATGATGGAGAAGTACCATCCGGGCCTCGGCGATCATCGGTGGCCCTTGGTTACCCATTTTGTCGGCTGCAAGCCGTGCGGTAAGTTCGGTGACTACCCTGTGGAGCGATGTCTGAAGCAGATGGACAGGGCCTTCAATTTTGGGGACAATCAGATCCTGCAAATGTATGGTTTCTCCCACAGATCTTTGGCGAGCAGGAAGGTGAAGAGGATTCGAAATGAGACTGATAAACCGCTGAATGTCGAGGATCGATTCGGATTGCTTCACCCGGCCTTTAAGGCTGTTAAGGTTCAGGATTCTGGATCTTGATTTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGTTTTTGTTAGATGATTTTGGTTAGGTATGCTCATCTTTGGGTTTGAGCTAAGTATATATTCATATGGTGAGAGATTCGCGTCTTCAGATCTAATCATCTGAGCACTGGCTGCAAAATTGAATCTTCCTGCTTTCTCAGTCTCTCAGATAAAACCTTTCTATATATATTGAATTTTTAATGTTGTCATAATATTCCATTGAAATAGCTATATTATCATGTTGGATCTGAAATAATCATCGTAATAATCATTGTATATGATAATTTTAGGGTTTTAATGAAAGAACTACTGCAGGTTTGGAGAGTATAAGAAAATATCTTAAATCATGAACATGCAACCTGCCTTGCGCATCAAAAGTGTGTACTGAATCCTTCAAATATCTTGGTGATTGAAGGCTTCGGCACATTTGGGGGGAGATTGAATCATGAAGACAAACCCGCACAATCTGAAGCCAAGGAAAAATCATGCAGGAGTCACATGACTAAGGTTCCATTATAATATAAAAGAATAATTTGAGCACACTTCTTAACATACATCACACCTTATATCTAATCCTCACTAGTTATATGTATTTGGTATGCAACACCCTTACACAAATTATCATAAAAGCAAATGATTATTTTTAGGAGTTCAAAACATCCTTTTGATTGTATTTTTAGGAGTTTCAAGAGTTTCTTACATAAATAATCATAAATGCAATTTGATGCTTACAAAGGATAGAACATCCATTTTGAATGGATCTAAGAGTTTTAGGAGCACTCAAGTCATCACCATGCCCAATAATCTCTCACTTGGAAAAGGGTGATGCTTCTTCTTTTTCTTTTAAGTTCACCTCTTTACTCTCAATTATATAAATTTTATGAAAATATAAAACATAAGCATTAATATTTATATTTATCCATATATGTAAACACACATGCATATACATATATTTTATATAGATTCACAAGTTAGTAAGGTTCTAATTTTCTCAAAGCGACTGCATATATAAATGCGTATAGCATCTTGTGTATATTTTCTTAAACTATTAATCATGTTCATACCAACTATACAAATCTAATATCATATTTAATGTAAAATTTAAACAGAAATTTCGTATAAAATTTGATGATAGAAAGGATGTATACAATCATAGAAAATGAGATTAAAACCTAAGATGATATGGGATGACAATTATCTCAAAAGAAATGTTTGTCATCATAACAGCATTAATATCATCTTTAATCTTCACTAGTCATCATTATTAATTAATGCTTTTGATTTATGATGGGCTTTATAATATTGAAGAGAATCAAACGCATCCACTTAAGTGGTTGGATTCGATTATCTCATCAACTTCAGAATCATTCGGTCTCAAGAATTAGCATAAGTCTCATTATCCCTCCATTTTTTTAAATAAAATTTGATCAAAAACCTGTTAAAAATTCACATAGCATGCTTTAAATACTTGCATGCATATAATTTATTGCATATGATCAAAATAATACTCAATGCATCAAGAACAATTTCTGTGAATCAATGCTTTAGGTTTATATGTGTATACTAGCTCTACTAGTCTCTCTCTCTCTCTATACATATATATGAGCTCACGAGATCTTTCAGGTATAGTTTAGACTCGTGTTACTCATCAATTCTAAGTGAAGAATATGGCCCTCTTGCGAGCCTCCAACAATAATTAGGTCCTTTCAAGCTTAAGTTTCAAGGTGCAAATGAGAAGGAGAACTCCTATAGTTGAGATATTAAGCACATTTATGGTGGGGGGATAGAAATCACCTTCTTTTTCAAAACTTTGGTAAGATTTATTGGAACAGCTTAAGATTGTTACTTAATATAATTAGCTTAATTAAATTTTGAAATCCCACAATTAAATTATAATCATCATTTGATTCAAATTCTAAACTTTTGATCCATT

Network for GWHGAAEX002000

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05637.11	Glyco_transf_34	129	368	3.60E-72

Protein Sequence

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT34
Carbohydrate-Active enzymes Family	GT34

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016757	Molecular Function	transferase activity, transferring glycosyl groups
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	40.470
SRP064423	SRR2545915	Juvenile tuber	45.020
SRP108465	SRR5643513	five period of Gastrodia elata	37.160
	SRR5643514	five period of Gastrodia elata	29.550
	SRR5643515	five period of Gastrodia elata	52.850
	SRR5643524	five period of Gastrodia elata	26.090
	SRR5643525	five period of Gastrodia elata	42.030
	SRR5643528	five period of Gastrodia elata	44.910
	SRR5643658	five period of Gastrodia elata	31.260
	SRR5643659	five period of Gastrodia elata	82.560
	SRR5643660	five period of Gastrodia elata	79.300
	SRR5643661	five period of Gastrodia elata	93.750
	SRR5643662	five period of Gastrodia elata	96.320
	SRR5643663	five period of Gastrodia elata	99.130
	SRR5643664	five period of Gastrodia elata	110.610
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	70.760
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	41.740
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	62.440
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	55.280
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	30.400
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	27.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	67.590
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	41.790
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	59.340
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	84.580
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	49.650
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	49.650
SRP279888	Gastro	Gastrodia elata tuber	58.61
	Juven	Juvenile tuber	45.21
	Mother_Gastro	Mother tuber of Gastrodia elata	31.02
	Mother_Juven	Mother tuber of Juvenile	30.58