Gene detail

Detail information of GWHGAAEX002006/evm.TU.scaffold_115.27

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743786823\|ref\|XP_010922267.1\|	1.42E-35	PREDICTED: major pollen allergen Aln g 1-like [Elaeis guineensis]
Swissprot	tr\|P38948\|MPAG1_ALNGL	2.00E-19	Major pollen allergen Aln g 1
trEMBL	tr\|B9H206\|B9H206_POPTR	6.00E-33	Uncharacterized protein {ECO:0000313\|EMBL:EEE85504.2}

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000116	491950	492958	+

Transcript Sequence
>GWHTAAEX002006 CTTCTGTATAAATTCTTCTGCAATGGTTCCTTTACAGTAACTAAGGCGCAGAGCGAAAAGAAAAAAAAACAACAGCGATGGTGACTGCTTCATTCAGCCGTGAAGACCAGCTGCTTGCCTCACGTGATAGAGTGTGGAAAGCCGCCATTCTCGACACCCATACTTCAATTCCGAAGCTCATCCCTGAGCACGTTTCCAGCATCGAGATCAACGGAGATGGCGGCCCCGGCACTGTCAAAAAATTCAATTTCACTTCGAAAGAATTCCCACACACTGCATACCAGGTGGAGGAATTAGACCGCGAGAACCATTTGGTGAGGTTCATTACGATCGATGGGGGGATTGATGTCCCCAGGCTCAAATCTCACTTAACTGAATTAAAGTTTGAAGTGGGAAGGCATGGCTTTGGAACTCTGGTTAAGTTCACGATAGAGTATGAAACCAAGGACGATGCTCCTCTTACTGCTGAAGAAGAAGATGTGATCTTTATTGGCTTAGTGCTGCTGCTAAGGGCCGTTGATGTGCACCTCCATGCAAATCCAACAGCTTATGTTGAATGAAGTTCTTCTTAGTGTGGGAGTTCAGATGAGTCTTTCGTGATTGTTAGTCTTCGTGGTTGTTTTATGAGCTTTCTTATGCATTTATGTGGGTGTGAAAATTTATGTATTTGTTTAGCTCTGCTTTTATTATGAATAAAAGGCTGTTTTGTGTGCACATTGCTGAGTTTTTCTGCACTTTTTTGTTTCGAACTTCTATGTTTGAACAAAAGTGGGGATCATATCCAAACAATTTCGTTATGGTAGTAAGGTTTGAACGTGATTCGAACGATCGAACGAACTCTTTCGTTCTCGTTCGCTCGACTGTAAATTTTTCCGCAAATTCTCCTGTTCGTC

Network for GWHGAAEX002006

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00407.18	Bet_v_1	2	152	5.50E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0006952	Biological Process	defense response
GO:0038023	Molecular Function	signaling receptor activity
GO:0010427	Molecular Function	abscisic acid binding
GO:0004864	Molecular Function	protein phosphatase inhibitor activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	116.440
SRP064423	SRR2545915	Juvenile tuber	235.530
SRP108465	SRR5643513	five period of Gastrodia elata	1414.300
	SRR5643514	five period of Gastrodia elata	1303.840
	SRR5643515	five period of Gastrodia elata	1146.210
	SRR5643524	five period of Gastrodia elata	1313.150
	SRR5643525	five period of Gastrodia elata	78.800
	SRR5643528	five period of Gastrodia elata	144.140
	SRR5643658	five period of Gastrodia elata	117.280
	SRR5643659	five period of Gastrodia elata	991.230
	SRR5643660	five period of Gastrodia elata	489.320
	SRR5643661	five period of Gastrodia elata	1045.990
	SRR5643662	five period of Gastrodia elata	229.040
	SRR5643663	five period of Gastrodia elata	639.940
	SRR5643664	five period of Gastrodia elata	221.100
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	419.900
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1343.160
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	658.880
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	445.710
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	84.150
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	55.900
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	386.050
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	228.440
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	500.230
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	334.320
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2017.120
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2017.120
SRP279888	Gastro	Gastrodia elata tuber	117.75
	Juven	Juvenile tuber	540.46
	Mother_Gastro	Mother tuber of Gastrodia elata	30.22
	Mother_Juven	Mother tuber of Juvenile	325.08