Gene detail

Detail information of GWHGAAEX002010/evm.TU.scaffold_115.33

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|385809228\|ref\|YP_005845624.1\|	Polyribonucleotide nucleotidyltransferase [Ignavibacterium album JCM 16511]
KOG	KOG1067	Predicted RNA-binding polyribonucleotide nucleotidyltransferase
nr	gi\|672144233\|ref\|XP_008796014.1\|	PREDICTED: LOW QUALITY PROTEIN: polyribonucleotide nucleotidyltransferase 2, mitochondrial [Phoenix dactylifera]
Swissprot	tr\|Q6KAI0\|PNP2_ORYSJ	Polyribonucleotide nucleotidyltransferase 2, mitochondrial (Precursor)
trEMBL	tr\|M5X076\|M5X076_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ18896.1}
TAIR	AT5G14580	polyribonucleotide nucleotidyltransferase, putative

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000116	605318	715800	-

Transcript Sequence
>GWHTAAEX002010 ATGGCCGCTGCTACAGCCATTAAGGCGGCAAAGAACCCTCTCGTTTCGTCACTTCCCCGCTTCCTAGCATGGCGTAGCCCTGGATTCCGGCGCTTCTGCAGTAGCAGCGCCGATCTTCTGTCACCATCGCTGTCAGAGTCGGAGCAAAATTTGGATTCTTCTTCTTCCGCATGCCCATTAATTCCTGGACGTAAGGTGCTGGATTCTGTCAAGGAGGAGTTTGAGATTGGTTCTCGCACCATCACCATTGAGACCGGCAAGATCGCACGCTTTGCAAATGGTTCCGTTGTCATCACTATGGACGAAACCAACGTCCTCGCTACCGTTTCCTCAGCGAAAACAGACGTCTCCCGGGATTTTTTACCGCTCACGGTTGATTATCAAGAAAAACAATATGCGCAAGGTGTCATTCCTACAACTTTTATGCGAAGAGAAGGCGCTCCAAAGGAACGAGAACTTCTATGTGGGCGTCTAATTGATAGACCAATCCGTCCACTATTCCCTTCTGGTTTCTACCATGAAGTTCAGGTTATGGTGAACGTTATTTCATCTGATGGTAAACAAGATCCAGATGTAATGGCTGCAAATGCAACCTCTGCTGCACTTATGCTTTCTGACATCCCTTGGGGAGGACCTGTTGGCATGATACGTGTGGGGAGGATAGATGGGCAATTGGTCTTAAATCCAACCATGAATGAGCTGAGCATGAGCGATCTTAATTTGGTTTATGCTTGCACTAGAGATAAGACTTTAATGATAGATGTACAAGCTCGTGAGATCTCAGAAAAAGATCTGGAAGCAGCCTTAAAGCTGGCACATCCTGAGGCTGTCAAGTACATTGAACCTCAAATAAGATTGGCTCAAAAAGCTGGTAAACAAAAGAAAGAATATCGATTATCTATGATCATGGAAAAGACACTTGAGAAGATCAGAAGTTTGGCAGAAGAACCGATTGAGGCTGTTTTCACTGATGCGACATATGGAAAGTTTGAGCGTGGGGAAGCTTTGGACAAAATTGCACATGATGTTAGATCAAAGCTTGAAGAAGAAATTGACGAGGAGAGTTTAAAAGCTCTGCCAAAGGCTGTTGATATGGTTAGAAAACAGATTGTTCGTAAAAGGGTTATCAATAAAGGTTTGAGAGTTGATGGGAGAAAGCTTGATGAAGTCAGGCCTTTGCATTGTGAAGCTGGCCCCTACCCTGTTTTGCACGGATCCTCAGTTTTCTCACGTGGTGATACTCAAGTTTTGTGTACTGTAACCATTGGGACTCCTGGAGATGCGCAGCGGTTGGATTCACTCGTTGGCCCTCCCACAAAACGCTTTATGCTACATTATAATTTTCCTCCCTTTTGTATTAATGAGATTGGCAAACGTGGTGGTTTAAATAGGCGTGAAGTTGGGCATGGAACTCTTGCTGAGAAGGCTTTGCTAGCTGTATTGCCTCCTGAAGATGAGTTTCAATATACTGTTCGTGTTAATTCTGAAGTTATGTCATCTGACGGTTCTACATCAATGGCATCTGTTTGTGGAGGTAGTATGGCATTGATGGATGCTGGAATACCTGTAAGAGAACATGTTGCTGGTCTTTCAGTGGGCCTTGTCAGTGAAGTAGACCCATCTACTGGAAATATAAAAGATTACCGCATCCTTACAGACATACTTGGCCTTGAGGATCACCTTGGTGACATGGATTTCAAAATTGCTGGAACAATGAAAGGAATTACAGCAATTCAGTTGGATATAAAACCTGCTGGAATTCCTCTAGACATAATCTGTGAATGTTTGGAAGTTGCTCGAAAGGGTCGTATTCAGATAATTGATAGGATGAATGAAGAAATAAGCTCACCCCGTACTATGAATGATGGAAATGCCCCACGATTAGCTACTATGAAGTTGGATGATGAATCCTTACGTCGCTTACTCGGACCTCTTGGTTCACACAGGAAAAAGGTTGAACGGGAAACAGGTGCACGGATTGCTGTGAATGATGGGATTGTTACCATAGTTGCTAAAACCCAATCAATTATGGAAAAAGCCCAAGAAAAGGTTGACTTTCTAGTTGGGAGGCAGATCCAGGTTGGTTCTATTTACAAAGGTCTCATTTCCTCAATCAAAGAATATGGTGCTTTTGTGGAATTAAATGGCGGGCAACAAGGTCTTCTCCATATCTCTGAACTATCGCATGAACCTCCATCTAAAGTTTCTGATGCTGTATCTGTTGGCCAAGAACTATCATTAATGTGCATCGGTCAGGACGTGCGGGGCAACATAAAATTATCTTTGAAGGCCATTCTTCCTAAACATCGCTCTAAAAAAAAGAATCCAGAAGAAGTCGATTCTGTTTCTTCAGATAAACAAGATGCTAATTTCAGTTCCTCTCTGGATGAATGCCCAAAGTCATCGTTCTTTGGAACTGTTGCGGAAGGCGGCATTGATAGCAAAGATGAAGAAAATTCCGAATGTTCAGTGCCGTCTATTGTTATTAGGAGCGCCGCAGAATGCGATGCTCAGGATGGTGCCAAATCCCTGAAGGTGGTTAAGAAGACTGCGAGGAAATCTCTACCCAGGCCTTACAATCCCTCGCCTTCACGTAAAGATAAAGGAGCATCAGGAAGATCCATAGCGGAGGCTTCTTCTGCAACAACAATTGTGAGTCTGCTACATAAAGGCGGAGAAGATTCATCGCCTGTGGATTCAGGCAAAAGAGTCAGTGATGTGGGCGTTGCTGAAAATAAGTTTGAGTCGTCTCAAAATTCATTGAAACTGGGGGACAGATTAACAGCGAAGATATACCAGATACGTGCACATGGACTGGTGCTTGAAGTGCCCGGAGGTCTGCGAGGAATGTACAAGTTTGAGGCGAATAGTAGAAAAGATTATGAGGCCGGAAAGGAGCTTCGAGTCAAGTGCACGAGCTTCTCAGCAAAGGGAATCCCTGTTTTTTCTTTGTTGAAAGACAACTAATCTTTTCTTCGTCTTCTTTTTGTTACTTTTCCTTTAATCTGTTTTGTTATTTCTCTTTGGCTTATATCCGGATAACAATCCGTTTAACATTGCCAAGAATTAATTAATGTGGAAGCTGTGCATTATTTATTGCAAGGTTGCTTGGAAGATTTGCTGGAGAGATGGGATTCAGATGATATATATAATATAATTTGAG

Network for GWHGAAEX002010

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01138.20	RNase_PH	78	208	6.40E-22
PF03725.14	RNase_PH_C	211	273	1.50E-14
PF03726.13	PNPase	307	386	4.10E-16
PF01138.20	RNase_PH	389	522	6.80E-24
PF00575.22	S1	693	763	1.70E-11

Protein Sequence

>GWHPAAEX002010
MAAATAIKAAKNPLVSSLPRFLAWRSPGFRRFCSSSADLLSPSLSESEQNLDSSSSACPLIPGRKVLDSVKEEFEIGSRTITIETGKIARFANGSVVITMDETNVLATVSSAKTDVSRDFLPLTVDYQEKQYAQGVIPTTFMRREGAPKERELLCGRLIDRPIRPLFPSGFYHEVQVMVNVISSDGKQDPDVMAANATSAALMLSDIPWGGPVGMIRVGRIDGQLVLNPTMNELSMSDLNLVYACTRDKTLMIDVQAREISEKDLEAALKLAHPEAVKYIEPQIRLAQKAGKQKKEYRLSMIMEKTLEKIRSLAEEPIEAVFTDATYGKFERGEALDKIAHDVRSKLEEEIDEESLKALPKAVDMVRKQIVRKRVINKGLRVDGRKLDEVRPLHCEAGPYPVLHGSSVFSRGDTQVLCTVTIGTPGDAQRLDSLVGPPTKRFMLHYNFPPFCINEIGKRGGLNRREVGHGTLAEKALLAVLPPEDEFQYTVRVNSEVMSSDGSTSMASVCGGSMALMDAGIPVREHVAGLSVGLVSEVDPSTGNIKDYRILTDILGLEDHLGDMDFKIAGTMKGITAIQLDIKPAGIPLDIICECLEVARKGRIQIIDRMNEEISSPRTMNDGNAPRLATMKLDDESLRRLLGPLGSHRKKVERETGARIAVNDGIVTIVAKTQSIMEKAQEKVDFLVGRQIQVGSIYKGLISSIKEYGAFVELNGGQQGLLHISELSHEPPSKVSDAVSVGQELSLMCIGQDVRGNIKLSLKAILPKHRSKKKNPEEVDSVSSDKQDANFSSSLDECPKSSFFGTVAEGGIDSKDEENSECSVPSIVIRSAAECDAQDGAKSLKVVKKTARKSLPRPYNPSPSRKDKGASGRSIAEASSATTIVSLLHKGGEDSSPVDSGKRVSDVGVAENKFESSQNSLKLGDRLTAKIYQIRAHGLVLEVPGGLRGMYKFEANSRKDYEAGKELRVKCTSFSAKGIPVFSLLKDN

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00962	pnp, PNPT1	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0006396	Biological Process	RNA processing
GO:0006402	Biological Process	mRNA catabolic process
GO:0003676	Molecular Function	nucleic acid binding
GO:0003723	Molecular Function	RNA binding
GO:0004654	Molecular Function	polyribonucleotide nucleotidyltransferase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	14.750
SRP064423	SRR2545915	Juvenile tuber	15.580
SRP108465	SRR5643513	five period of Gastrodia elata	14.120
	SRR5643514	five period of Gastrodia elata	15.040
	SRR5643515	five period of Gastrodia elata	10.390
	SRR5643524	five period of Gastrodia elata	11.630
	SRR5643525	five period of Gastrodia elata	2.800
	SRR5643528	five period of Gastrodia elata	1.820
	SRR5643658	five period of Gastrodia elata	2.290
	SRR5643659	five period of Gastrodia elata	18.940
	SRR5643660	five period of Gastrodia elata	19.380
	SRR5643661	five period of Gastrodia elata	18.790
	SRR5643662	five period of Gastrodia elata	20.090
	SRR5643663	five period of Gastrodia elata	20.070
	SRR5643664	five period of Gastrodia elata	24.550
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	16.930
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	16.500
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	14.490
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	16.230
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	13.110
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	15.730
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	15.640
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	15.730
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	17.870
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	15.130
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	14.930
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	14.930
SRP279888	Gastro	Gastrodia elata tuber	22.25
	Juven	Juvenile tuber	27.52
	Mother_Gastro	Mother tuber of Gastrodia elata	4.66
	Mother_Juven	Mother tuber of Juvenile	13.01