Detail information of GWHGAAEX002011/evm.TU.scaffold_115.34


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|192359049|ref|YP_001980963.1|3.00E-09polynucleotide phosphorylase/polyadenylase [Cellvibrio japonicus Ueda107]
KOGKOG10677.00E-19Predicted RNA-binding polyribonucleotide nucleotidyltransferase
nrgi|661893646|emb|CDP02087.1|1.99E-18unnamed protein product [Coffea canephora]
Swissprottr|Q9S7G6|PNP2_ARATH2.00E-19Polyribonucleotide nucleotidyltransferase 2, mitochondrial (Precursor)
trEMBLtr|A0A068U1A0|A0A068U1A0_COFCA7.00E-19Coffea canephora
TAIRAT5G145807.00E-19polyribonucleotide nucleotidyltransferase, putative

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000116719967735722-
Transcript Sequence

Network for GWHGAAEX002011

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module6

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00962pnp, PNPT1 RNA degradation map03018

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.860
SRR2545915Juvenile tuber1.930
SRP108465SRR5643513five period of Gastrodia elata0.250
SRR5643514five period of Gastrodia elata0.370
SRR5643515five period of Gastrodia elata0.460
SRR5643524five period of Gastrodia elata1.000
SRR5643525five period of Gastrodia elata0.540
SRR5643528five period of Gastrodia elata0.250
SRR5643658five period of Gastrodia elata0.570
SRR5643659five period of Gastrodia elata0.400
SRR5643660five period of Gastrodia elata0.220
SRR5643661five period of Gastrodia elata0.000
SRR5643662five period of Gastrodia elata0.890
SRR5643663five period of Gastrodia elata0.330
SRR5643664five period of Gastrodia elata0.410
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_11.540
SRR6049655Rhizomagastrodiae_C368-T10_good_10.290
SRR6049656Rhizomagastrodiae_C368-T07_good_12.150
SRR6049657Rhizomagastrodiae_C368-T07_good_11.930
SRR6049658Rhizomagastrodiae_C368-T04_good_14.530
SRR6049659Rhizomagastrodiae_C368-T04_good_14.480
SRR6049660Rhizomagastrodiae_C368-T01_good_16.310
SRR6049661Rhizomagastrodiae_C368-T04_good_13.360
SRR6049662Rhizomagastrodiae_C368-T01_good_11.360
SRR6049663Rhizomagastrodiae_C368-T01_good_10.950
SRR6049664Rhizomagastrodiae_C368-T10_good_11.230
SRR6049665Rhizomagastrodiae_C368-T10_good_11.230
SRP279888GastroGastrodia elata tuber 2.36
JuvenJuvenile tuber0.56
Mother_GastroMother tuber of Gastrodia elata 1.03
Mother_JuvenMother tuber of Juvenile 0.83