Detail information of GWHGAAEX002012/evm.TU.scaffold_115.35
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743765313|ref|XP_010912874.1| | 0 | PREDICTED: putative pentatricopeptide repeat-containing protein At5g08490 [Elaeis guineensis] |
| Swissprot | tr|Q9FNN9|PP370_ARATH | 0 | Putative pentatricopeptide repeat-containing protein At5g08490 |
| trEMBL | tr|I1NZI9|I1NZI9_ORYGL | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA02G0114500.1} |
| TAIR | AT5G08490 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000116 | 736011 | 738761 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002012
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 158 | 187 | 0.013 |
| PF01535.19 | PPR | 263 | 290 | 0.00017 |
| PF13041.5 | PPR_2 | 363 | 409 | 2.00E-10 |
| PF01535.19 | PPR | 439 | 464 | 0.027 |
| PF01535.19 | PPR | 600 | 628 | 0.00083 |
| PF01535.19 | PPR | 699 | 729 | 3.40E-07 |
| PF01535.19 | PPR | 735 | 761 | 0.0081 |
| PF01535.19 | PPR | 772 | 796 | 0.089 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 16.520 |
| SRR2545915 | Juvenile tuber | 13.240 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.840 |
| SRR5643514 | five period of Gastrodia elata | 6.730 | |
| SRR5643515 | five period of Gastrodia elata | 6.820 | |
| SRR5643524 | five period of Gastrodia elata | 6.910 | |
| SRR5643525 | five period of Gastrodia elata | 7.700 | |
| SRR5643528 | five period of Gastrodia elata | 6.890 | |
| SRR5643658 | five period of Gastrodia elata | 9.960 | |
| SRR5643659 | five period of Gastrodia elata | 5.880 | |
| SRR5643660 | five period of Gastrodia elata | 7.350 | |
| SRR5643661 | five period of Gastrodia elata | 3.500 | |
| SRR5643662 | five period of Gastrodia elata | 6.270 | |
| SRR5643663 | five period of Gastrodia elata | 7.230 | |
| SRR5643664 | five period of Gastrodia elata | 8.040 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.150 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.580 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.910 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.280 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 24.650 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 29.330 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 18.950 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 23.390 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.890 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.220 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.550 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.550 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.95 |
| Juven | Juvenile tuber | 6.85 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.51 | |
| Mother_Juven | Mother tuber of Juvenile | 5.06 |