Detail information of GWHGAAEX002015/evm.TU.scaffold_115.38
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 8.00E-23 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|731373349|ref|XP_010651607.1| | 0 | PREDICTED: protein NSP-INTERACTING KINASE 3 [Vitis vinifera] |
| Swissprot | tr|Q93ZS4|NIK3_ARATH | 0 | Protein NSP-INTERACTING KINASE 3 (Precursor) |
| trEMBL | tr|D7TDJ5|D7TDJ5_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI28568.3} |
| TAIR | AT1G60800 | 0 | NSP-interacting kinase 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000116 | 750250 | 768632 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002015
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 38 | 77 | 6.60E-12 |
| PF13855.5 | LRR_8 | 105 | 164 | 4.10E-08 |
| PF00069.24 | Pkinase | 314 | 582 | 2.00E-45 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-II |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 29.790 |
| SRR2545915 | Juvenile tuber | 42.880 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 18.900 |
| SRR5643514 | five period of Gastrodia elata | 17.200 | |
| SRR5643515 | five period of Gastrodia elata | 16.320 | |
| SRR5643524 | five period of Gastrodia elata | 14.490 | |
| SRR5643525 | five period of Gastrodia elata | 20.190 | |
| SRR5643528 | five period of Gastrodia elata | 10.440 | |
| SRR5643658 | five period of Gastrodia elata | 15.480 | |
| SRR5643659 | five period of Gastrodia elata | 21.800 | |
| SRR5643660 | five period of Gastrodia elata | 20.850 | |
| SRR5643661 | five period of Gastrodia elata | 20.530 | |
| SRR5643662 | five period of Gastrodia elata | 18.480 | |
| SRR5643663 | five period of Gastrodia elata | 21.040 | |
| SRR5643664 | five period of Gastrodia elata | 22.190 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 17.380 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 21.060 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 18.850 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 24.590 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 18.510 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 17.710 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 16.990 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 19.940 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.870 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.550 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.970 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.970 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 24.37 |
| Juven | Juvenile tuber | 35.71 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 25.91 | |
| Mother_Juven | Mother tuber of Juvenile | 32.70 |