Detail information of GWHGAAEX002020/evm.TU.scaffold_115.43
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 1.00E-65 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|743851491|ref|XP_010940144.1| | 0 | PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Elaeis guineensis] |
| Swissprot | tr|C0LGQ5|GSO1_ARATH | 0 | LRR receptor-like serine/threonine-protein kinase GSO1 (Precursor) |
| trEMBL | tr|I1HLD3|I1HLD3_BRADI | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI2G34337.1} |
| TAIR | AT4G20140 | 0 | Leucine-rich repeat transmembrane protein kinase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000116 | 826480 | 829712 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002020
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 40 | 73 | 1.00E-09 |
| PF00560.32 | LRR_1 | 102 | 124 | 0.016 |
| PF00560.32 | LRR_1 | 438 | 460 | 0.52 |
| PF13855.5 | LRR_8 | 485 | 545 | 8.60E-08 |
| PF13855.5 | LRR_8 | 753 | 809 | 1.70E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.000 |
| SRR2545915 | Juvenile tuber | 2.030 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.440 |
| SRR5643514 | five period of Gastrodia elata | 1.910 | |
| SRR5643515 | five period of Gastrodia elata | 2.260 | |
| SRR5643524 | five period of Gastrodia elata | 1.840 | |
| SRR5643525 | five period of Gastrodia elata | 0.840 | |
| SRR5643528 | five period of Gastrodia elata | 1.100 | |
| SRR5643658 | five period of Gastrodia elata | 1.180 | |
| SRR5643659 | five period of Gastrodia elata | 0.340 | |
| SRR5643660 | five period of Gastrodia elata | 0.640 | |
| SRR5643661 | five period of Gastrodia elata | 0.700 | |
| SRR5643662 | five period of Gastrodia elata | 0.890 | |
| SRR5643663 | five period of Gastrodia elata | 0.680 | |
| SRR5643664 | five period of Gastrodia elata | 0.400 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.890 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.210 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.070 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.630 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.640 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.090 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.580 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.550 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.030 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.160 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.430 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.430 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.83 |
| Juven | Juvenile tuber | 0.21 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.06 | |
| Mother_Juven | Mother tuber of Juvenile | 0.33 |