Detail information of GWHGAAEX002021/evm.TU.scaffold_115.44
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 4.00E-53 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|242087053|ref|XP_002439359.1| | 0 | hypothetical protein SORBIDRAFT_09g005100 [Sorghum bicolor] |
| Swissprot | tr|C0LGR3|Y4265_ARATH | 0 | Probable LRR receptor-like serine/threonine-protein kinase At4g26540 (Precursor) |
| trEMBL | tr|C5Z131|C5Z131_SORBI | 0 | Putative uncharacterized protein Sb09g005100 {ECO:0000313|EMBL:EES17789.1} |
| TAIR | AT5G56040 | 0 | Leucine-rich receptor-like protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000116 | 833387 | 838002 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002021
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 77 | 110 | 8.70E-07 |
| PF13855.5 | LRR_8 | 325 | 384 | 9.50E-08 |
| PF00560.32 | LRR_1 | 397 | 419 | 1.3 |
| PF13855.5 | LRR_8 | 420 | 480 | 1.40E-06 |
| PF00069.24 | Pkinase | 734 | 941 | 1.90E-35 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-XI-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.640 |
| SRR2545915 | Juvenile tuber | 4.900 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.130 |
| SRR5643514 | five period of Gastrodia elata | 7.730 | |
| SRR5643515 | five period of Gastrodia elata | 5.910 | |
| SRR5643524 | five period of Gastrodia elata | 6.530 | |
| SRR5643525 | five period of Gastrodia elata | 10.010 | |
| SRR5643528 | five period of Gastrodia elata | 7.040 | |
| SRR5643658 | five period of Gastrodia elata | 11.860 | |
| SRR5643659 | five period of Gastrodia elata | 4.430 | |
| SRR5643660 | five period of Gastrodia elata | 3.530 | |
| SRR5643661 | five period of Gastrodia elata | 4.930 | |
| SRR5643662 | five period of Gastrodia elata | 3.350 | |
| SRR5643663 | five period of Gastrodia elata | 4.730 | |
| SRR5643664 | five period of Gastrodia elata | 4.570 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.980 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.220 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.550 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.480 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.960 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.930 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.760 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.240 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.690 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.810 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.110 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.110 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.51 |
| Juven | Juvenile tuber | 2.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.12 | |
| Mother_Juven | Mother tuber of Juvenile | 1.10 |