Gene detail

Detail information of GWHGAAEX002023/evm.TU.scaffold_115.46

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|291302513\|ref\|YP_003513791.1\|	6.00E-12	pyruvate phosphate dikinase PEP/pyruvate- binding protein [Stackebrandtia nassauensis DSM 44728]
nr	gi\|695011158\|ref\|XP_009392285.1\|	0	PREDICTED: alpha-glucan water dikinase, chloroplastic isoform X1 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q8LPT9\|GWD1_CITRE	0	Alpha-glucan water dikinase, chloroplastic (Precursor)
trEMBL	tr\|M0SEL4\|M0SEL4_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P14470_001}
TAIR	AT1G10760	0	Pyruvate phosphate dikinase, PEP/pyruvate binding domain

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000116	850107	940095	-

Transcript Sequence
>GWHTAAEX002023 TGCTGGTCCGTACGCCGAAGAGCTTTTCTCGTACGTGCAGCTGCTAAGCTGCCTTCGCTCACTTGTGCTATAACTAAAGAGGTTTCATTGCTTCCCCATCCTCTTAAACACCTGTCAGCCATTGCTCAACTTTCTTCCAAAGAGAAAATACTTGGCCATCGTAAGAGAATGCAGCATCCAAATCTACACGTAAGCGGAGCAAAGTCAAAAGAGATGACCGGAAATTCTGTTTCAGAAAGCACGAATGCTAGTGGGCACTATATGAATTTGGTGCAAGAGCCCGAGCACTTTGAGGCTTATTTGGAAGGCCGCATTCAATGCTCAAACAACTCATCGGCAACAAACAAGAGGGCTTTGCTTGCGAGGCTTTGTTTGGGACAACACCTGAGACTCAGTGATCCCTCTTCTTCTCCATGTACTTGTTCAAAGAACATGAGCAATACTTTAGGGCATATTGCTGTTCAGCAAACTCTTTGTGGATTGTCTGTATCGGAAAGTCTTAGCAGCAACCAACCTTGTATCGCCCCATGTGTGTCTTATGTAATGCCTTTTTGCTCAAAAAAGTTTCAAGCATCTCCACATAGCCGGAGGCCCGTACTCTCTACCAAATTTCTTGACAAACGTCTGAGTGGTTGGAAAACTAAATCTGTGTTGGAAATGCATCGGGCTTCTCATTTTATTCCCCGTGCTGTTCTAGCCACTGATTCTTCTCCACAGCTTCAAGGCAAGTTCAATTTGGATGAAAATTCTGAGCTGCAGGTTGTTTTGTCTTCACCTACCAAAGGCCCCCCATTGATAATTGATTTCCTGGTCACCAATGGCGGTGAATCTCTAATTCTTCATTGGGGCGCACTTCGCAACAGGAAGAATGATTGGGCCCTTCCTTCACGGCATCCAGATGGAACAAAAGTTTATGAAAACAGTGCTCTTAGAACTCCCTTTGTTAAATCTGGTAGCAGTTCCTTAGTTAAATTAGAGATTGATGATCCAGAGGTACAAGCTATCGAGTTTCTTATACATGATGAGCAACATAATAAATGGTTCAGAAATAATGGGCAGAATTTCCAAGTTCAATTGCCTGGAAATAGCTGTCAGATTCTAGATATTCCAGCTAAAGAGAATATAAATGTTTCAGTTCCAGAAGATCTTGTAAAAATTCATGCATATCTTAGATGGGAAAAAAAAGGCAGACAAGCTCTTACACCAGAACAAGAAAAGGCTGAATATGAAGCTGCTAGAAACGAGTTGCTTAACGAGGTTAAAAGAGGAATTTCTCTTGAAGAACTCCGTGCAATGTTGTCCAAAAAACCTGATAAAACGAAAGAAGTCACTGCTGAAGTTGAAATACCAAACGATCTTGTTCAAACACAGGCATTTATACGATGGGAAAAAGCTGGCAAACCACCCTATTCTCCTGAGAGGCAACTCCTGGAATTTGAGGAAGCAAAGAAAGAGCTTCTGCTGGAACTAGAAAAAGGGACATCTCTCCATGAGATTAGGCGGCAGCTAGCAAAAGGAAATATGAAGAGCGAACAATTTATGAAACCAACGGATAAAAAATATTTTAATTTTGAGAGAATACAACGTGAAAATAGAGATCTTATGAAGCTCATCAATGGCCACTCTTTCCAACCCACCGAAGAAAAAGCTTTTGATACCAAAAGCTCTCTAACTCCTGTGGCGCTCTGGTCAAAGGCTTTAGAGGATAGATTTGGTGGCCAAGTTTTTCTTAGAAAGTTTTTTAAGCTGGATGATATGGAGCTTATGGTGCAAGTGGCTAATACTGATGGTAAAATAAAAGTTTTTTTGTGCACCGATTACAAGAGACCGCTTCTTCTTCACTGGGCCTTATCAAAGAAGGCTGGCGAGTGGATGGCGCCACCAAACAGTTCATTACCTCCAAATTCAGTCTTGCTAGACAGTGCATGCCAGACCCCATTTGCTGATGTCTTTTTAGATAATCCACCTTATCAGTTGAAACTTATTGAGGTAAATATTCATGATGAACACTTTGATGGGATGCCATTTGTTCTTTGTTCTGGTAACCACTGGATAAGAAACTTGGGTTCTGACTTTTACGTTGAATTTGGTGGTCAAATTAGTATTGTGAAGGATGCTGTAGATGAAAAAGGTATTGCTAAGTCTTTGCTTGAAAGAATAGCCGATTTGGAGAGTACTGCAGAAAGATCATTTATGCACAGATTCAACATAGCGTCGGATTTGTTACTCCAAGCTAGAGATGCTGGTAAATTGGCTCTTGTTGGAATTCTTGTGTGGATGAGATTTATGGCTTCAAGACAACTAGTGTGGAACAAAAATTACAATGTGAAGCCTCGTGAGATAAGCAAGTCACAAGATAGACTTACAGACTTGCTTCGAGATATGTACAAAAGTTTTCCTACATATAGGGAAATCCTTAGGATTATCATGTCTGCTGTTGGCCGTGGAGGTGAAGGTGATGTCGGACAGCGCATCAGAGATGAGATTTTGGTCATACAGAGGAATAACGACTGCAAAGGTGGTATGATGGAAGAATGGCATCAGAAACTACACAACAACACTAGTCCTGATGATATTGTCATTTGTCAGGCACTGATTGACTATGTAAACCACAACTTTGACGTCAATGCTTACTGGAAGACATTGAACCAAAATGGCATCACAAAGGAGCGGTTATTATGCTATGATAGGGCGATACGTTCTGAACCTCATTTTAAGTCCAACCAGAAAGAAGGCCTTTTGCGTGATCTTAGAAATTATTTGAGAACTCTTAAGGCGGTGCACTCAGGTGCTGACCTTGAGTCTGCTATTGCAACTTGTTTAGGTTACAAATCTGAGGGGCAGGGCTTTATGGTGGGGGTTCAAATAAATCCTATAAAAGGCTTTGCACCTGGCTTACCGAAGACACTGAGATTTTGCCTTAATCATGTTGAGGATAAAATGGTAGAGCCCTTGCTTGAGGGTTTGTTGGAGGCACGAGCAATACTTCGTCCTTTATTACTGAGTTCTCCTGAACGCTTAAAGGATATTATTTTCTTGGATTTGGCTCTTGATTCTACAGTTAGAACTGCTATAGAGAGAGGATATGAAGAACTTAACAAAGCAGAGCCAAAGAAAATCTTGCATTTTATCTCTCTTGTTCTTGAAAATCTTGCATTGTCTACCGATGACAACGAGGATCTGATATACTGCTTAAAGGGATGGAACTTTGCTTTGGAGTTATGCAAGAAAAAGGATGATCAATGGGCATTATATGCAAAGTCTTTTCTTGATCGAACTCGACTTGCCTTATCCAGAAAGGCTGAATATTTCCATCAAATTCTTCAGCCTTCTGCTGAGTATCTTGGATCATTGCTTGGAGTTGATAAGGGAGCTGTTGACATTTTTACTGAAGAAATTATTCGTGCTGGCTCAGCTGCTTCTTTATCATTACTACTAAATCGCATTGATCCAATTCTTAGGAAGGTTGCAAACCTTGGCAGTTGGCAAGTCATAAGTCCAGTTGAAGTATGTGGATACATAGTCTCAGTCAATGAGTTGCTTTCTGTCCAAAACAAATCTTATACGCAACCTACAATTTTGGTGGCCAAGAATGTAAAGGGAGATGAAGAAATTCCCAATGGCACTGTTGCAGTGCTAACGCCTGATATGCCAGATGTTCTTTCTCATGTCTCTGTTCGTGCAAGAAATAGCAAGGTTTGCTTTGCTACTTGCTTTGATCCCAATATATTAACTGAATTTGAAAGAAATGAAGGGAAATTATTTAGCATAAAACCTTCTTCTGCAGATATCATTTTTAGTGAAGTCACTGATAGTGAACTAAAAGACTCGAGCTCCAGAGATGTAAATGATGGAAGAACTCAATCTCTGACCATAGTCAAGAAGAATTTTGCTGGTAGATATGCTATAGTTGCAGAGGAGTTTACTAACGAAATGGTGGGGGCAAAATCACGTAACATAGCATATCTCAAGGGGAAAATTCCTTCTTGTGTAGGAATCCCAACATCAGTTGCTATACCATTTGGAGTTTTTGAGAAGGTTCTGGCTGACAACATAAATAAGGATGTAGCTAATAGTGTGAGCAAACTCAAGAAAAAACTGGTTGATGGTGACTTCAATGTTCTTGGTGATATACGCAGAGCTGTTCTAATGTTGGCACCTTCTTCTCAATTGATCACAGAACTGATGGAGAAAATGAATATTTCTGGAATACATTGGCCTGGGGATGAAGGTGAACATCAATGGGATCAAGCATGGACGGCTATCAAGAAGGTTTGGGCCTCGAAGTGGAACGAGAGAGCATATTTCAGCACTCGAAAAGTAAATCTCGATCACGACCATCTCTGCATGGCTGTCCTTGTCCAAGAAATTATAAGTGCTGACTATGCTTTTGTCATCCACACTACTAACCCATCGTCTGGAGACTCATCCGAGATTTATGCCGAGGTTGTAAAAGGGTTGGGAGAAACTCTGGTGGGCGCCTATCCTGGCCGTGCTCTTAGCTTTGTTTGCAATAAAAATAATATCGACTCTCCAAAGGTTCTTGGATATCCAAGTAAGCCAATTGGCCTCTTCATCAAGCAGTCCATTATATTCAGATCCGATTCCAATGGTGAAGACTTAGAAGGCTATGCCGGTGCAGGCTTGTATGATAGTGTTCCAATGGACGAGGCGGAGACGGTGGTGCTTGATTACATGTCAGATCCTCTGATCACAGATGGAAGCTTTCGGAAGTCGATACTGTCTAGCATTGCTCGTGCCGGAAATGCCATTGAAGAGATCTTCGGATCCGCACAGGACATCGAGGGAGTCGTCAAAGATGGAAGGATTTTTGTCGTGCAGACGAGGCCACAGATGTGATGCAATTTTTCTTCTTTTTCAAGTAAATAGTAGTGTCATGAGTGTTCTTTGCTTTCAGTTAGAAGCTCACTTTGCAATGCAATGCCCGGTGATTTGATCTGTGTAATTATACTGTATTTAACATTGCAGATTAGGAAAAATAATCTTATTTCTTCGCTCAAGTGAAATGGAAAGGATGAAAGCTGCACATTTCTTGAAACCCTGAACTTGTAGAGATTGTGAGAGCTTATTACCCTTTCATAAGAGGGCATATATTTTTAAAAAAGTTGTCCCTCTGCTTGAAAATAGTGTGCTAAGATTTCCACTAGCATGTAGACTTATTAGTTGTGCTGAAAGATAATGCCATTAGAATCATTGGACATAGCTATAGTAGCAAATATGTGGTCCATGTGATTCTTTCAAACGCTGCCAATTATTACATCAATACTTGCATCAACATTCTTCTTGATGATTGTGAAAAGTCAAATGTTACTCTATTTTCAAACATCATCAATCACTAATGTGGTAAGGCACTTAATTATTTCTTGCTAATGATTAGTTGATGGTTGGGGC

Network for GWHGAAEX002023

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module3

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01326.18	PPDK_N	1416	1618	2.60E-17

Protein Sequence

>GWHPAAEX002023
CWSVRRRAFLVRAAAKLPSLTCAITKEVSLLPHPLKHLSAIAQLSSKEKILGHRKRMQHPNLHVSGAKSKEMTGNSVSESTNASGHYMNLVQEPEHFEAYLEGRIQCSNNSSATNKRALLARLCLGQHLRLSDPSSSPCTCSKNMSNTLGHIAVQQTLCGLSVSESLSSNQPCIAPCVSYVMPFCSKKFQASPHSRRPVLSTKFLDKRLSGWKTKSVLEMHRASHFIPRAVLATDSSPQLQGKFNLDENSELQVVLSSPTKGPPLIIDFLVTNGGESLILHWGALRNRKNDWALPSRHPDGTKVYENSALRTPFVKSGSSSLVKLEIDDPEVQAIEFLIHDEQHNKWFRNNGQNFQVQLPGNSCQILDIPAKENINVSVPEDLVKIHAYLRWEKKGRQALTPEQEKAEYEAARNELLNEVKRGISLEELRAMLSKKPDKTKEVTAEVEIPNDLVQTQAFIRWEKAGKPPYSPERQLLEFEEAKKELLLELEKGTSLHEIRRQLAKGNMKSEQFMKPTDKKYFNFERIQRENRDLMKLINGHSFQPTEEKAFDTKSSLTPVALWSKALEDRFGGQVFLRKFFKLDDMELMVQVANTDGKIKVFLCTDYKRPLLLHWALSKKAGEWMAPPNSSLPPNSVLLDSACQTPFADVFLDNPPYQLKLIEVNIHDEHFDGMPFVLCSGNHWIRNLGSDFYVEFGGQISIVKDAVDEKGIAKSLLERIADLESTAERSFMHRFNIASDLLLQARDAGKLALVGILVWMRFMASRQLVWNKNYNVKPREISKSQDRLTDLLRDMYKSFPTYREILRIIMSAVGRGGEGDVGQRIRDEILVIQRNNDCKGGMMEEWHQKLHNNTSPDDIVICQALIDYVNHNFDVNAYWKTLNQNGITKERLLCYDRAIRSEPHFKSNQKEGLLRDLRNYLRTLKAVHSGADLESAIATCLGYKSEGQGFMVGVQINPIKGFAPGLPKTLRFCLNHVEDKMVEPLLEGLLEARAILRPLLLSSPERLKDIIFLDLALDSTVRTAIERGYEELNKAEPKKILHFISLVLENLALSTDDNEDLIYCLKGWNFALELCKKKDDQWALYAKSFLDRTRLALSRKAEYFHQILQPSAEYLGSLLGVDKGAVDIFTEEIIRAGSAASLSLLLNRIDPILRKVANLGSWQVISPVEVCGYIVSVNELLSVQNKSYTQPTILVAKNVKGDEEIPNGTVAVLTPDMPDVLSHVSVRARNSKVCFATCFDPNILTEFERNEGKLFSIKPSSADIIFSEVTDSELKDSSSRDVNDGRTQSLTIVKKNFAGRYAIVAEEFTNEMVGAKSRNIAYLKGKIPSCVGIPTSVAIPFGVFEKVLADNINKDVANSVSKLKKKLVDGDFNVLGDIRRAVLMLAPSSQLITELMEKMNISGIHWPGDEGEHQWDQAWTAIKKVWASKWNERAYFSTRKVNLDHDHLCMAVLVQEIISADYAFVIHTTNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVCNKNNIDSPKVLGYPSKPIGLFIKQSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAETVVLDYMSDPLITDGSFRKSILSSIARAGNAIEEIFGSAQDIEGVVKDGRIFVVQTRPQM

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CBM45

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016310	Biological Process	phosphorylation
GO:0016301	Molecular Function	kinase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	203.350
SRP064423	SRR2545915	Juvenile tuber	297.500
SRP108465	SRR5643513	five period of Gastrodia elata	109.410
	SRR5643514	five period of Gastrodia elata	93.580
	SRR5643515	five period of Gastrodia elata	102.030
	SRR5643524	five period of Gastrodia elata	75.730
	SRR5643525	five period of Gastrodia elata	62.020
	SRR5643528	five period of Gastrodia elata	48.460
	SRR5643658	five period of Gastrodia elata	51.590
	SRR5643659	five period of Gastrodia elata	173.470
	SRR5643660	five period of Gastrodia elata	165.070
	SRR5643661	five period of Gastrodia elata	184.530
	SRR5643662	five period of Gastrodia elata	193.740
	SRR5643663	five period of Gastrodia elata	208.600
	SRR5643664	five period of Gastrodia elata	311.270
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	129.060
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	84.560
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	153.640
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	129.090
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	149.580
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	161.260
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	112.910
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	190.820
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	82.180
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	99.980
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	89.320
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	89.320
SRP279888	Gastro	Gastrodia elata tuber	351.40
	Juven	Juvenile tuber	136.65
	Mother_Gastro	Mother tuber of Gastrodia elata	69.87
	Mother_Juven	Mother tuber of Juvenile	124.66