Gene detail

Detail information of GWHGAAEX002027/evm.TU.scaffold_115.51

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|695066982\|ref\|XP_009380396.1\|	1.71E-167	PREDICTED: L-tryptophan--pyruvate aminotransferase 1-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q94A02\|TAR2_ARATH	2.00E-140	Tryptophan aminotransferase-related protein 2
trEMBL	tr\|M0SGD9\|M0SGD9_MUSAM	9.00E-166	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P20730_001}
TAIR	AT4G24670	1.00E-137	tryptophan aminotransferase related 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000116	994407	1006406	+

Transcript Sequence
>GWHTAAEX002027 GAATGAGAAAAAGCTGCTTTACCCTCTGTAGTCATTAATAAGCGAACAAAAAAAAAAAAAAAACCGCCTGTTCCCCCAACCCAACAACAAAAAGCTCCGCCTTCTATTCTCTCCTCCCAATGTTCCTCCAGAAATAAACTTCAAAATGCCAGCGAAGAACACGAAGAGCTCCATTGGAGAACGGTAGGAGTGGATGGATGCTACGAGGAAGGGAGCTGAATCTCCTTTCTCCCTTCATCTTCACATCATTTTCAGTTGAAGAAGAGGAAGAAGGCCCGTTTCATATTATGCATGCTTCCACTTTACAATTCCCAAGAACCGATCACCTGGAAGTAGAGATAAGGGAAGCAAAGAAAAGGCCTTTCGCTTTCAAAAAGTAGAAATATAAAAAAGAGAGTAAAAAAGGCGCCATCTTTTATCTGCAAGTCTCTTTAACATATGCATCACTCGAAGCATTTCATGCCAAGTAGAAGCGGTCAGCTGCTCCGGCGGCGCACGGAGTGCCGATCTTGGGAGCCAGTTTTTGAAAAGCTTCAAATGCCCAAATCGAAGCATTTTATGCCGAGTAAAAAAGGCGTTTTTTGGGTGTTAACAGGCTCCCTGTTTATGCTGCATCTTTTAGCCGTCTTCGTGGTCTTTCCTCTGTACAACAAGGATGGATTCAGAGGCGAAATACAGAGGCGCTTTCCCTTAGCGGTAAGATCTATAGGAAAAAAGCAGAGTTTTGAGGCATCTTCATCAATGGCGGATGCGGAGAAGGAAGAGGAGATCAGTGTTAGCGTTACCAGCGGCTCCATTCCTTCTTCAAGGGATTCTATCATAAATCTTGATCACGGAGATCCGAAGATGTATGAGCAATTCTGGCGGCAAGCCGGCAATGCAGCGGAGCTGGTCATCTCGGGTTCTCAAACAATGAGCTACTTCTCTGACGTGACCAATCTGTGCTGGTTTCTCGAGCCCGAGTTTGCGGCTCAAATTCGACAGATCCACCGCCTCGTCGGAAATGCCGTAACAAATTCCGAAAGCTACATAATCGTCGGCACCGGCTCGTCCCAGCTCTTCCAGGCCGCCCTCTACGCTCTTGCCACGTCCCCTGAAGTCTCCAGCCACGATGGAGGTCGGCCTCTCCCTGTTGTTTCCTCTGCCCCTTACTACTCGTCTTATCCTGCAGCCACGGATCTCCTCCAGTCGGGTCTCTTCCGCTGGGCCGGCGACACTAGTTATCTCAAAGAAGGCGGCAGCAGTAAGCCTTACATTGAAGTCGTGTGCTCGCCGAGCAATCCCGACGGCCTCGCCAAGTCTCCGTCGTCCATCTCCCCCTATGGAAAAATAATTCATGACCTCGCATATTACTGGCCGCAGTACACCGCAATCACCGGCCCTGCAGATCACGATATCATGCTCTTCACTGCTTCCAAGTGCACTGGCCATGCCGGGATGCGGCTGGGCTGGGCTATCGTCAAGGACAGAGAAGTTGCGAGGAGGATGACCAAGTTTATAGAGATCAGCACCATAGGCGTCTCAAAAGACTCCCAACTGCGGGCCGCAAAGCTTCTGAAGGCGGTCTTCGATCAGTATGATAACCAAGAGACTGATGAATCCGCCAAACTGTTTCATTTTGGCAGGAGGACGATGAGAGATCGATGGCTGAGGCTTCGTGAAGCCGTCGCGGCCTCCGGCCATTTCAGTTTGCCGGCATTCAGCCCTGAGCACTGCAATTTCATGAAAGAAAGCACCTTTCCCTCACCTGCTTTTGCTTGGCTAAAGTGCGAACGGGATACCAAGGACTGCGAGAGCTTTTTTCGACGGAATTACAAGATTATTGCGCGAAATGGGAAGTATTTTGGAGCGGACGCAAAGTACGTGAGGATCAGTATGTTGGATTGTGTCGAGACTTTCGATATGTTCATCGAACGGCTTTCATCGGTCCATCTGTGATGGAGGCTGTGTATGGTCGGTTCAGCAGGTGATGCTGCCTTGTGGTTTTGTTGGAAAGCTGATGCTCTTTTTGTTTTTGTTTGTGATGAAATGTCAAATGATATCCCTATTATGTGCAGTATGTATGGTGCCTTTGCTGCATGGAGAAGATCTCCACACTTTCTTATTGCTGTTACTTTTCTTCTTTGCATAGGAAAATGAGAATCGGTCAAATTTAAATTATGGAGACGTTTAGTGACCTCCACACAATAGCTAAATAATTACCATTGCCTC

Network for GWHGAAEX002027

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04864.12	Alliinase_C	128	497	4.90E-138

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K16903	TAA1	Metabolic pathways	map01100
K16903	TAA1	Tryptophan metabolism	map00380

Gene Ontology

GO term	Ontology	Name
GO:0016846	Molecular Function	carbon-sulfur lyase activity
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.960
SRP064423	SRR2545915	Juvenile tuber	2.900
SRP108465	SRR5643513	five period of Gastrodia elata	2.390
	SRR5643514	five period of Gastrodia elata	3.760
	SRR5643515	five period of Gastrodia elata	2.000
	SRR5643524	five period of Gastrodia elata	2.140
	SRR5643525	five period of Gastrodia elata	0.440
	SRR5643528	five period of Gastrodia elata	0.280
	SRR5643658	five period of Gastrodia elata	1.100
	SRR5643659	five period of Gastrodia elata	0.890
	SRR5643660	five period of Gastrodia elata	0.380
	SRR5643661	five period of Gastrodia elata	0.580
	SRR5643662	five period of Gastrodia elata	0.220
	SRR5643663	five period of Gastrodia elata	0.360
	SRR5643664	five period of Gastrodia elata	0.260
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.460
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.910
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.580
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.990
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.890
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.340
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.270
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.300
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.580
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.520
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.640
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.640
SRP279888	Gastro	Gastrodia elata tuber	0.48
	Juven	Juvenile tuber	1.55
	Mother_Gastro	Mother tuber of Gastrodia elata	0.22
	Mother_Juven	Mother tuber of Juvenile	0.56