Gene detail

Detail information of GWHGAAEX002029/evm.TU.scaffold_115.54

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|108803574\|ref\|YP_643511.1\|	2.00E-27	serine/threonine protein kinase [Rubrobacter xylanophilus DSM 9941]
KOG	KOG0581	0	Mitogen-activated protein kinase kinase (MAP2K)
nr	gi\|743838193\|ref\|XP_010936633.1\|	0	PREDICTED: mitogen-activated protein kinase kinase 3 isoform X2 [Elaeis guineensis]
Swissprot	tr\|O80396\|M2K3_ARATH	0	Mitogen-activated protein kinase kinase 3
trEMBL	tr\|A0A067EVD6\|A0A067EVD6_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO55162.1}
TAIR	AT5G40440	0	mitogen-activated protein kinase kinase 3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000116	1044400	1082703	+

Transcript Sequence
>GWHTAAEX002029 TTCCCGCCGGCCTGGAACCGCTCAGGCCAAGCGCAGGTCAAGAAATGGAACTGCAAAAATTCGTTGAATTCTTTGGAGAGTAATCGTTCATGTGACCAGACAATATCAGACAATCTAACATTATAAAGCGGGGTACTTCGCGCGAACTCCTGGAGATCTCGCTTCGCCAGGCGCCGAGGTTCGCCGAGATCGCTTCCTCCATCGCTACCTTACGCACTCGCCTCGCTCAGTCCGGCCGCACTTCTGCTTCCGCAGAGGCTCGCCCGACTCCCTCTCGCTTCTCGCCTCTCGCAAGCAGCAGCCACTCGTCTGACATCAGGCGGCGCTCGTCTATTAGAAATCAAACTTTATTATTTCCTTTATGGGCAATTAATTTTGGTTTCTTAAGTTAGCCTGCAAGGCTTCTAATGGCTGGGTTAGAGGAGCTTAAGAAAAAATTGCAACCTTTGTTTGATGCGGAAATTGGACCTTCCATGGGAATATCAATGGATCCTTTTGAGTCATATATGGTATCAAATGAAGGAGCTGTAAATTTGCTGAGCAAGTCTTGCGGAGTTTATAGCTTTTCTGAAAATGGCTTAGAGAAGAGAACTAATGGAATTGCAGATGATATAGATTGCAATGAGCAAGCATATCGATGCTTTTCTCACGAGATGCATGTGTTTGGAGCCATTGGATGTGGGTCAAGTAGTGTTGTTTACAAAGCTATTCATATACCATTTCACCAAATTTTAGCCTTGAAGAGGATCAACGTCTTTGAAAAGGAGAAAAGGCAACAGCTTCTTAACGAGATAAGAACACTATGTGAGGCAGCTTACTTTCAAGGACTAGTTGAATTTCATGGGGCATTTTATACTCCTGAGTCTGGTCAGATAAGCATTGCGCTTGAGTATGTGGATGGAGGTTCACTAGCAGATGTTTTGCTGTTAAGGAAGTCTATATCTGAGCCAGTTCTTTCGCACATTGCTCATAAATTACTGATTGCCCTAGGATATTTGCATGGAGAAAGACATCTAGTTCATAGAGATATAAAGCCAGCAAACTTGCTCATAAATCTTGAAGGCGAGACAAAGATTTCTGATTTTGGTATAAGTGCAGCTTTGAACAACTCAATAGCTATGTGTGAGACTTTTGTTGGAACCGTTACATACATGTCGCCAGAGAGAATCCAAAATGAGAGCTACTCGTATGCTGCTGATATCTGGAGCTTCGGTGTAGCCATGTTTGAATGTGCTGCTGGCAAATTTCCTTATTCAGCAACTGAAGGAGCTGTTAATCTGATGCTACAAATTTTATATGATCTATCACCGTCACCTTCCAGGGACTCCTTTTCTCCTGAGTTCTGCTCCTTCATTGACGCTTGCCTTCATAAAGATCCTAGTGCAAGACCAAGAGCTGATGAGCTTTTGAGTCATCCTTTTATCACAAAGTACGAGAAAGATGATGTGGATTTGGCAGCATATGTTCGAAGTGTTTTTGATCCAATTCAGAAATTGAAGGACATGGCTGATATGCTTGCTGTACACTATTACTTGCTCTTTGACGGAGCTGACAGGCACTGGCATCATGCTATGAGCTTCTATGACGAGAAATCGGTTTTTAGGTTTGGTGGGAAGCTGTTTCGGGGGCAGAACGGTGTGTTTACAGCTCTGACGGGCATAAGGAGGAAATTGGCAGGGGAACGGCCGCGTGAGAAGCTCGTGCATGTCGTTGAGAAGCTCCACTGCCGTGCGCACAGAGACGGCGGGGTTGCGATACGCGCGTCCGGATGTTTCGTCGTCGGTAACCAGTTTCTTATATGCGGCAATGGGGCGCAGGCAGAGGGCATGCTCAGCGTTAAAGAAGGCTCCCTTGACGTGGCCGGCACTTGTAGGGTGGGTGCCTTTCAAGAGCAGTTCATTATGGAACCTGGGACTTCTTCTATTGGAGTTTTCTTGATCTCTGAGCAGGAACTCTATATTCAGGCTTGAGTTGCATAGGTTCCGGCAGGGTGTTTAGATGGGAAACATGTCCTCCAAATTTTACGTATTTACATAAAAGTTAATGTCAAAATACATCGTATTCCTTTTGCATAATATTATATAAATACGTAAAACTTGGGGGGATGTCTCTAATCTAAACCCACGGTGTATACGCAGTGTTCATAAAATACCCTGACCTTTTTTGTCACTTGAAAAATAAAAGAAAACCTGATGAGAAACAGAAAAAGCATTTGTATATCTTATCTTATATATTCAGCTTTCTCACAAAAAAAATTAATTATAAGTTAATATAATTATAGGGAAACTTAATTATATTGTAATTATGTTATTTTACTGTTGTTTCATAAATTTACAGAAATTTTACATATATTTGTTTGGAATGTAAGTAATT

Network for GWHGAAEX002029

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	85	339	3.50E-59

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	STE_STE7

KEGG pathway

KO	Enzyme	pathway	mapID
K20607	MKK3	MAPK signaling pathway - plant	map04016

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	22.990
SRP064423	SRR2545915	Juvenile tuber	42.730
SRP108465	SRR5643513	five period of Gastrodia elata	30.770
	SRR5643514	five period of Gastrodia elata	35.270
	SRR5643515	five period of Gastrodia elata	34.700
	SRR5643524	five period of Gastrodia elata	36.210
	SRR5643525	five period of Gastrodia elata	33.700
	SRR5643528	five period of Gastrodia elata	40.530
	SRR5643658	five period of Gastrodia elata	35.200
	SRR5643659	five period of Gastrodia elata	39.800
	SRR5643660	five period of Gastrodia elata	40.100
	SRR5643661	five period of Gastrodia elata	39.370
	SRR5643662	five period of Gastrodia elata	42.210
	SRR5643663	five period of Gastrodia elata	40.920
	SRR5643664	five period of Gastrodia elata	43.470
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	26.140
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	21.970
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	28.900
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	23.590
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	28.200
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	29.020
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	27.930
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	27.840
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	37.610
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	35.890
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	35.300
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	35.300
SRP279888	Gastro	Gastrodia elata tuber	38.26
	Juven	Juvenile tuber	34.94
	Mother_Gastro	Mother tuber of Gastrodia elata	42.48
	Mother_Juven	Mother tuber of Juvenile	39.66