Gene detail

Detail information of GWHGAAEX002030/evm.TU.scaffold_115.55

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|147921441\|ref\|YP_684744.1\|	2.00E-12	chaperonin Hsp40 [Methanocella arvoryzae MRE50]
nr	gi\|672158391\|ref\|XP_008798935.1\|	0	PREDICTED: uncharacterized protein LOC103713704 [Phoenix dactylifera]
Swissprot	tr\|Q9FH28\|DNJ49_ARATH	3.00E-12	Chaperone protein dnaJ 49
trEMBL	tr\|F6HGB5\|F6HGB5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51308.1}
TAIR	AT5G53150	4.00E-168	DNAJ heat shock N-terminal domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000116	1086258	1099755	+

Transcript Sequence
>GWHTAAEX002030 CCTTTTTCAAAAAAAAAACTCTTTTAATTTGATCTACTTTTTCACAGGTTTGGTGAAAAAAAAAATCGAGATGGAGGATTTGGATTTCTGATGGCACCCCGCTACTGATAATAGATCAGCACTCTCTTTAGACAGGTATTCCTCTTACTGTGTTCCAAATTCGCTGAGGTTTTTCGCGAATTTTTTTCACCGGCGGCGATGGCCGGAAGCCGGAGATCGAGCTGTTAGGGTTCCGCGGTATTTGCCTATGATAATCGCTCATTGGTCTTCGAAGGAGCTATAGGAGTGATTTCAGTTCACGGATTTATGGCTTGTCTGTGCGCTATCTGTCTGCTTTTGCTGTTATTAGTGAAGGCTTTTGGCTGTGCTAGGATTTACTAATTTGCAAAGTATAGAAGTTTGAACTCGGTTCCAGTTTGTTTGGGTTGTTGAATTTGGCAATGGATTGCAATAGGGACGAGGCATTGCAAATCAAAGAGCTTGCCGAAAGAAAGTTTATTGAAAAGGATTATGTGAGTGCTAAGAACTTTGCGTTGAAGGCCCAGAATCTCTTCCCATCTCTAGATGGAATAGACCAAATGATAACTATCTTTGATATTTATCTTGCATCAGAGAGTAAAGTAAATGGGGAGACAGATTGGTATGCCGTTCTTCTTGTTAGTGCGTTAGCTGATGAAGAGACAGTAAAGAATCATTACAGGAAGCTAGCTCTTATGCTGCATCCAGATAAGAACAAAGCTGCAGGTGCTGAGGGTGCTTTCCAGCTTGTTTCCAAGGCTTGGAGTGTGCTTTCTGATAAGAATAAAAAAATGCTGTATGACCAGGGGAGATTTGGGAAAGAGTCATATCAGAAAACTTCTCAACCCAAGGATTCCTCTGCTTCCATCTTTGATAACAATGGGTTTTACCTGTATTCTAACAATGCCACAACCAAGGAGAGAGCACAACAGTACAATTCTCACAGACCTCCATCTCGCCCTCCACCTCCGACATTCTGGACCTCTTGCGCTGCATGTTGCATGCAATATGAGTACCATAGGGTGTATCTTAACAAAAGTCTTCTATGCCCCAAATGCAAACAGCCGTTTCTTGCCACAGAATTGCCTGTTCCTCCTAGTGGACCTAGGAATCATCAATTGTTCTCTAAACAGCATAACCAGAATACTAAACATAAGGGTGTTTATAAAAATGCCTCTACTCTTACAGGAGCGGGTGCCTCAGGAGTCCAGCGTGGTCCAAGTAATGATTCATTAACCAATCAAAACGTACAATGGGCTCCATTTTCAGGAGCTGGTACTAATGGCTTGTCTACCAGTACCATACAGACTGCTAACGTTAGTCATCAAGCATATAAAGCAAAAAGGCAACGAGATGATGCTCAAGCAACTGCTAAAAGGGAAGAGGCTCTCCGCCGAAAGTTATCAAGAAGGGCTGGTGTTAGTTCTGGAAATTTTAATAATGTAATTGTCTCTGATAACTATGCAACAAGAAGAACTTGCACTAGAGATGATTTTGGAAATATTACTACCACAAATCATGCGGTTGTGAATATGGGGTATAGAAGAAATAATGTTCCTGAAGCAGACAAGGGCGCTTGGTTTTATGGTGATACCCCTAGGTCTAGATTGATCTCAAATCCTTCAAGCCTCAACTGTGTTTACACTCACGTGGATATCCGATCTGAATTAATAGAAAAGGCTAAGAAAGGAATATTGAAGAAACTTAAAGAATTTTATTCAGCTGAAGCTACAAAAGCTAAGAGTGATGATAGAAGGATGAAGAAGCTGAAGATCAGAGATGTTCAAGAGACTAGTTTAGATGTAGCTGATAAAGAAAATGCGAAGTACACAGTTTTGAGAGATTCAGTTGATATGAAAATAATAGAACGCTCACGGAGCAACAACAAAGAAATTCCAGTCAAGGAGCTTTGCCTAAAGAACGTCAGTGACAATTCACGCAAGCAAGTAAATCACCATCTTGCAATTGATGTTCCTGATTCAGATTTTCATGATTTTGATAGTGACCGCACTGAAAAATCTTTTGGAGCTGATCAAGTATGGGCTACCTATGATGATGATGATGGCATGCCTCGGTATTATGCCTTTATTCAAAAAGTTCTATCTGTAAAACCTTTTAAAGTTCTTATGAGCTTTCTCACATCAAAATCAAATGCTGAGTTTGGGCCGTTAGATTGGGTCAGTAGTGGTTTTCCTAAAACATGTGGAGATTTTAGAGTTGGGAGATATGTAGTTGCCAACAGGATTAATATTTTCTCTCATAGGGTTAAGTGGGAAAAAGGTTTTCGTGGGGTTATTAAAGTTCTGCCAAGAAAAGGTGATATTTGGGCTTTATACAGAAATTGGAGTCCTGAGTGGAACGAGCTTACTCCTGATGATGTTATCCACAAGTACGAAATGGTGGAGGTTCTTGAGGACTATAATGAAGATCAAGGAATCTCAGTTGTTCCCTTAGTGAAGGTTGCGGGATTTAAAACTGTTTTCTTACGGCATATGGATCCAAAAGAGAATAAGAGGATAACAAAAGAAGAAATGTTTCGGTTTTCACATCAGGTGCCTTCTTATTTACTTACTGGTAAAGAAGCTCATAATGCTCCAAAGGATTGCCTTGAGCTAGACCCAGCTGCAACATCTCTGGAGCTACTTCAAATTCTTACAGAGACAAATGATGAGGATATTATGAAAGATAATGAAAGGAAGATAGTTGACAATGGTGTGACTTGGTCCAATATTTGTGCCAATACATGTAGTTGACGCTTTAGATGTATCAAAGCTCAAGGATTTTCCAACCTATACTCCTATTCAGCTATTTGGACTTTGATCTAAATGATTTTGGATCTAATATGTTCCAGGGTCATTTATCAGTGTCTTCAGTAGGTGTCAAAGTTGAATTTAAATGGAAATACAAACTTGTTTAGGAGTAGAAGGTACCTGCAATCAGCTTGTGGAGATCTTTCATTCAAACATTGAAGTTTTGATGTCCTCTTAGAATGTGGAGTTTTCAGTGATCTTATCTGAGAGTTGATCTGAAGAAAAAGTTAAGAAAGGTAGGCAAAAGCTGCTGAATTAGAAGACATACTGAGTGAGGGCTGACTAAATGGGAATGGGCGGCACACCAACAAAAAGAAGAGAAACAATGCCGGATGAATTCATACTTGTTACTGTACTATGGTAGAAATCTGAAACCGAATGGATGAACTCTTATTTTTTTAATTTAAAAGATTATTTTTTCAGGGATTTGTGTGGTTAACCTGAAGAAATATTAAATTTGATTTTCTGATTAATTTCAGAACAAATTTTGTTTATTTTCATTTTTATTTTTTTGCTAATAATCTCATTTATGCTTTGCATTATTTATTTATTTTTAAAAGTTCTTTTTTAGACAACGG

Network for GWHGAAEX002030

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00226.30	DnaJ	66	127	2.10E-19
PF11926.7	DUF3444	514	720	3.00E-74

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	45.360
SRP064423	SRR2545915	Juvenile tuber	30.710
SRP108465	SRR5643513	five period of Gastrodia elata	12.820
	SRR5643514	five period of Gastrodia elata	11.440
	SRR5643515	five period of Gastrodia elata	10.400
	SRR5643524	five period of Gastrodia elata	10.580
	SRR5643525	five period of Gastrodia elata	12.120
	SRR5643528	five period of Gastrodia elata	10.770
	SRR5643658	five period of Gastrodia elata	12.840
	SRR5643659	five period of Gastrodia elata	12.070
	SRR5643660	five period of Gastrodia elata	12.630
	SRR5643661	five period of Gastrodia elata	11.050
	SRR5643662	five period of Gastrodia elata	14.010
	SRR5643663	five period of Gastrodia elata	13.730
	SRR5643664	five period of Gastrodia elata	12.050
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	15.300
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.010
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.370
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	16.760
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	16.090
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	18.060
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	15.080
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	14.030
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.280
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	14.570
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.090
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.090
SRP279888	Gastro	Gastrodia elata tuber	14.03
	Juven	Juvenile tuber	15.20
	Mother_Gastro	Mother tuber of Gastrodia elata	16.13
	Mother_Juven	Mother tuber of Juvenile	17.30