Detail information of GWHGAAEX002043/evm.TU.scaffold_115.70
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428320931|ref|YP_007118813.1| | 2.00E-08 | putative signal transduction protein with EFhand domain [Oscillatoria nigro-viridis PCC 7112] |
| KOG | KOG0027 | 2.00E-31 | Calmodulin and related proteins (EF-Hand superfamily) |
| nr | gi|672141529|ref|XP_008794595.1| | 2.51E-45 | PREDICTED: probable calcium-binding protein CML41 [Phoenix dactylifera] |
| Swissprot | tr|Q8L3R2|CML41_ARATH | 6.00E-32 | Probable calcium-binding protein CML41 |
| trEMBL | tr|F6H034|F6H034_VITVI | 9.00E-38 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB45911.1} |
| TAIR | AT3G50770 | 2.00E-31 | calmodulin-like 41 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000116 | 1256836 | 1257409 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002043
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13499.5 | EF-hand_7 | 44 | 106 | 2.20E-08 |
| PF13833.5 | EF-hand_8 | 135 | 180 | 7.80E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13448 | CML | Plant-pathogen interaction | map04626 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005509 | Molecular Function | calcium ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.310 |
| SRR2545915 | Juvenile tuber | 2.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.550 |
| SRR5643514 | five period of Gastrodia elata | 42.050 | |
| SRR5643515 | five period of Gastrodia elata | 21.120 | |
| SRR5643524 | five period of Gastrodia elata | 32.950 | |
| SRR5643525 | five period of Gastrodia elata | 16.290 | |
| SRR5643528 | five period of Gastrodia elata | 18.640 | |
| SRR5643658 | five period of Gastrodia elata | 10.240 | |
| SRR5643659 | five period of Gastrodia elata | 28.650 | |
| SRR5643660 | five period of Gastrodia elata | 7.450 | |
| SRR5643661 | five period of Gastrodia elata | 12.370 | |
| SRR5643662 | five period of Gastrodia elata | 45.650 | |
| SRR5643663 | five period of Gastrodia elata | 18.550 | |
| SRR5643664 | five period of Gastrodia elata | 95.360 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 61.920 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 125.250 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 29.460 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 30.930 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 67.100 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 68.820 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 42.310 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 34.010 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 29.680 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 65.200 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 122.080 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 122.080 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.07 |
| Juven | Juvenile tuber | 0.19 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 33.22 | |
| Mother_Juven | Mother tuber of Juvenile | 12.78 |