Gene detail

Detail information of GWHGAAEX002046/evm.TU.scaffold_115.73

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4197	2.00E-143	FOG: PPR repeat
nr	gi\|672180490\|ref\|XP_008810441.1\|	0	PREDICTED: pentatricopeptide repeat-containing protein At1g04840 [Phoenix dactylifera]
Swissprot	tr\|Q9MAT2\|PPR10_ARATH	5.00E-144	Pentatricopeptide repeat-containing protein At1g04840
trEMBL	tr\|A0A067KWK1\|A0A067KWK1_JATCU	2.00E-179	Uncharacterized protein {ECO:0000313\|EMBL:KDP39353.1}
TAIR	AT1G04840	2.00E-143	Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000116	1292175	1294430	-

Transcript Sequence
>GWHTAAEX002046 AAATACATTTGAATTGTCTTCTTACTGCTTTTGATCTTTTTGCTGCAATCCTTATAAATTTAGTATTAAATTCTCTAAAGAAGACACCAACGCCAATGGGTTGGCCTTAGCAGAATGTTCTATTTAGATGACAATGGCTGTTAAACAATCAATTTGCTCTTGAAACTATGCAGTTGAATAGATGCGGCGGCGGCACTGCTCCTCCTTCCCGCTTCGTTTTCCTCGTTCACTCGGCTCGGTCAACTCTCCAGCTGAAGCAAATCCATGGCCATCTCCTCCGCCTCAACCTTCTCTCCGGCACCTCTCTGGCCGCCGCCGCCATCCTCTCCGCCTCCTCCTCTCTTGGCATCATCTCTCATGCCCTCGCCCTCTTTCACCACCTGCCTTCCCCTCCCCCTTCCACTCCTCTCTTCAACGCCCTTATCCGCTCTCTCTCTGATTCCTCCTTTCATTCCGCCGCTCTTTCCTACCTCGCCTTCATGCTCAGATCCGGCCTTCGCCCTGGCCGCCTCGCTTTCCCCTTCGGCTTCCGATCCGCCGCCGCTCTCCGTTCATCTCCATCCCTCGCCTCCTTTCACTCCGCCGTGGCTAAGTCTTGCCTTGATTTAGACCCCTTCGTCCGCACCTCGCTGGCCGACGCCTACGCCAAGCTCGGATCTCACCAGCTCGCCCTGAAGGTGTTCGATGAAACTCCCCAATGGCACCTTGCTTCAAATGTCCTCCTATGGAACATCGCCATCGCTGCCTCCTGCCGATCCGAGTCTCCTTGCAGGGCGAGGGAGCTCTTTGATAGAATGCCTGAGAGGAACACTGCGTCTTGGAACACCATGATTGATGGGTTCATGAAGGCGGGCGATCTGGAATCCGCGGCCGAGCTGTTTGATCAAATGCCTGAGAAGAATGTGGTGTCGTGGACCACAATGGCGGCAGGATTCTCTCGAAATGGGGACTATGAGGGATCTCTTACCATCTTTGAGAGCATGCTAGAAGCAGGCGTGAGGCCGAACGGCTTCACCATATCGGCCGCGCTGTCTGCTTCTGCCAAGATTGGGGGATTGAGCGCTGGCGTCCGCATCCACGATTACGCAAGAAGATGCGGGTTCCGTGAGGATGGGGCAATAGGCACCGCGCTCGTTGATATGTATTCAAAGTGTGGGAAAGTGGAGCTTGCTAGCCATGTCTTTGATAAGATGACTGAGAGGCATGTAGAAGCCTGGTCTGCCATGATAATGGGATGGGCTCTTCATGGTTGCTGGAGGGAAGCTTTTCGATGTTTCGAAGACATGAAGTGCTCATGCGTCAAGCCAGATGAGGGCGTTTTCTTAGCCGTTCTTGTGGCTTGTTCGCACGCTGGGAAGCTTGATAAAGGGCTTCAAGTGCTTGATAGCATGAAATCTCTATATCAAATTGAGCCGGGGATAAAGCACTACACGTGCGTTGTGGATATGTATGGCAGAGCTGGAAAGGTTAATGAAGCTTTTGAGTTCCTGAACTCCATGCTGATTGAACCAGATTATGTTCTTTGGGGAGCTCTTCTGTCTGCTTGTCAGTCTAACAAGAATGTAGAGATAGCGGAACTTGCAGCAGAGAGGCTATTAAGGCTGCAGCCGCTGCATGCGGGAAGCCGAGTTTTCGTATCCAACATGTATGCTGGTGCTGGAATGTGGGATGATGCTCAGAAAGTGAGGTCTAATTTGAAAAACAAAAGCCTAAGCAAGGTGCCTGGGTGGAGCTGCGTCAGACATGGAATGGGTGCTTCATGACAATTATGGAAAAGACTAGAGGTGCTCTCTTGGATGCCAAAGTGAGAAGTTAACACTGCCTTTTGGCCTCATGAGAACTGTAGAGGGGGAGGATATTAGGATAGTGAAGAATGTCAATAGTTTATGGGGATTACCATTCTTTGATGAAATTTGTCAGTAAGGCTACTTCATAGGCATTGTGATTAGAGATAATAAGCCCTCTAGTGATGGTAAGGCTGACAATTTGACTCGAAACTTGAATTCGAAATATTTTGACTCGAGTTGAGTTCTAGTCGAACGACTTGACTCGAAACCCTATTTGACTAGTTCGAGTCAGACTTAACTCGAAAATTTTGAATTTGAGTTTGAGTTGATTCGACTTGAACTTGACTCAAAGCTAGCCTTAATGATGAGTGTTCATGAGAGGATTACTCATAAGATAAAAATTCGACTTGATTATGTGATATTTCTTATATGTAAAAATATGTTTAATGTGATACACTTTTGATTATAA

Network for GWHGAAEX002046

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01535.19	PPR	153	174	0.2
PF13041.5	PPR_2	214	246	7.10E-09
PF01535.19	PPR	247	277	7.90E-06
PF17177.3	PPR_long	323	444	6.10E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.070
SRP064423	SRR2545915	Juvenile tuber	1.510
SRP108465	SRR5643513	five period of Gastrodia elata	3.580
	SRR5643514	five period of Gastrodia elata	3.180
	SRR5643515	five period of Gastrodia elata	3.470
	SRR5643524	five period of Gastrodia elata	3.690
	SRR5643525	five period of Gastrodia elata	1.940
	SRR5643528	five period of Gastrodia elata	1.530
	SRR5643658	five period of Gastrodia elata	0.940
	SRR5643659	five period of Gastrodia elata	5.870
	SRR5643660	five period of Gastrodia elata	6.530
	SRR5643661	five period of Gastrodia elata	6.380
	SRR5643662	five period of Gastrodia elata	6.420
	SRR5643663	five period of Gastrodia elata	5.260
	SRR5643664	five period of Gastrodia elata	4.530
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.650
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.410
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.600
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.330
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.940
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.710
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.650
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.980
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.330
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.720
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.250
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.250
SRP279888	Gastro	Gastrodia elata tuber	5.90
	Juven	Juvenile tuber	5.73
	Mother_Gastro	Mother tuber of Gastrodia elata	3.06
	Mother_Juven	Mother tuber of Juvenile	4.38