Gene detail

Detail information of GWHGAAEX002052/evm.TU.scaffold_115.78

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1677	8.00E-133	CCCH-type Zn-finger protein
nr	gi\|743813810\|ref\|XP_010929825.1\|	0	PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q9SWF9\|ZFNL_PEA	2.00E-177	Zinc finger CCCH domain-containing protein ZFN-like
trEMBL	tr\|F6GX27\|F6GX27_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB44513.1}
TAIR	AT3G02830	8.00E-133	zinc finger protein 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000116	1393184	1430662	-

Transcript Sequence
>GWHTAAEX002052 GGCAAACGACTGGCTCTCAGAGGTTGGCCGGCTTTTATCCCCCCATTCCTTGGTGGAGAAGAGGGCTCTTTTCTCCCCCACCTTGTTTTCTTTGCAGCGGTGTGGACTTTTCTGTATTCTTTGGGTCTTCTGCTGGCTTGACCTCGCCCTCCTCCTTTTCTTCTCGAAGGAGACGCAGCGGCCGACGGCCGTCGACGTCGGCGGCCAGCCAATGGAGCTCGACGGAAGCGAGGGGATTCAGCTGCCACCTCCGAGGTCGGTGGCCCTAGCCTCCTCCGTCTCGTCTTCACTTGCCACGCATCTCGACGAAGAGTCGATGTGGCAATTGAGTTTGAGAATGGGAGGGAATATAGATTCTGGACCTTATCCCGAGCGTCCAGGAGAGCCAGACTGTGCTTATTATCTCAGGACTGGCCTTTGTAGATTTGGCATTACTTGCAAATTTAATCATCCTGCTAACAGGAAACTGGCTGTGGCAAGGATGAAAGGTGATTATCCTGAAAGAGTAGGGCATCCTGAATGTCAGTACTATCTAAGGACAGGACTTTGTAATTTTGGACCTACGTGCAAGTTTCATCATCCTAAAGATAAGGCTGGAATCATAGGAAGAGTTCAAGTGAATATCCTAGGCTTTCCCCTTCGGCCTAATGAGAAGGAATGCGCATATTACTTGAGAACTGGATTGTGTAAATTTGGCCTCACCTGTAAATTTCACCATCCTCAGCCATCTAATGCAACACTTTCGTTACGCGGCTCCCCTATTTATCATGCTGTTCATCCTCAGCCATCTAATGCAACTCCTGGTGGGCAGTCCTTGACAGGAGCACTGACTAATTGGTCTTTGTCTAAACCTTCTTTTATAAACTCTCGTTGGCACGGACCTTCAAGCTATGCAACACAGCTTTTTCTTCCTCAAGGATTGGTTCAAGTCCCAAGCTGGAGTACATTTCCTCAGGGACAATTTGGATCTGCTTCATCTGCTGAAACCCAACAAGCAAATTCTGGAAGCACTCACTTCTATGGAACATCACACCAAAGAGAAACAACGACAGGCTCTTCTACATCATTTTCTTCTTTTAGAACTGCTTCAGTTCCTATGGAGCAATATGCGTGGCAGAGGAATAGTGTATTTCCCGAGAGACCCGGTGAACCTGAATGCCAGTTCTATATGAAAACAGGGGACTGCAAATTTGGTGCAGTTTGCAAGTTTCATCACCCTGCTGAAAGACGGATTCCTGCTCCGAACTGTGTGCTGAGCCCAATGGGATTCCCTTTACGCCCAAATGAACCTTTATGCGTATTCTACTCGCGTTATGGCACCTGCAAATTTGGCGCGAATTGCAAATTCGATCACCCTATGCCCTCTCCAACAGGCTCCTTTGCTTATAATCGTTTCACATCTTCGTGCGATGCCCCTGTTGTACGTGGGCCTTCGGGACCATCCCTGGGCCCTCGAGCCATTACCTTTTCATCAGACGGTTCTGCTGAAACTGGCCATGGTAAATCTAGACGCCTCTCGCCGTCTGATTCTCAGCAAATGGGTTCCAGCGATGAGAATGATGGATGATATGGCAATCCAAACACATGGTGGATTTCTTCGGTTTTTTCCCAGCTTTTATGAGGTAAAATAACATTTTCCACTGTAAATTGAGTCAATTGGTATCAGAGGTGTATAGTTTTTCTTGATGAGTTGATACTATCCATCCAATTTTTAAAAAATGAAAAAAATTGTGATTTTGAACTGTCATGTTGTAATCTGTGATATTTCCTCAAATATATAATTGAAAAGAATTCCTGTTTAAGGC

Network for GWHGAAEX002052

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00642.23	zf-CCCH	57	81	2.30E-08
PF00642.23	zf-CCCH	101	125	1.80E-08
PF00642.23	zf-CCCH	147	171	7.00E-09
PF00642.23	zf-CCCH	312	336	3.00E-09
PF00642.23	zf-CCCH	359	383	3.90E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	Molecular Function	metal ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	11.800
SRP064423	SRR2545915	Juvenile tuber	15.840
SRP108465	SRR5643513	five period of Gastrodia elata	9.690
	SRR5643514	five period of Gastrodia elata	12.190
	SRR5643515	five period of Gastrodia elata	8.620
	SRR5643524	five period of Gastrodia elata	10.580
	SRR5643525	five period of Gastrodia elata	16.980
	SRR5643528	five period of Gastrodia elata	13.790
	SRR5643658	five period of Gastrodia elata	12.830
	SRR5643659	five period of Gastrodia elata	13.250
	SRR5643660	five period of Gastrodia elata	13.710
	SRR5643661	five period of Gastrodia elata	14.250
	SRR5643662	five period of Gastrodia elata	16.720
	SRR5643663	five period of Gastrodia elata	16.770
	SRR5643664	five period of Gastrodia elata	11.340
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	9.360
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.730
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.450
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	11.250
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.340
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.610
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	12.950
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.750
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.110
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	13.690
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.030
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.030
SRP279888	Gastro	Gastrodia elata tuber	9.94
	Juven	Juvenile tuber	16.97
	Mother_Gastro	Mother tuber of Gastrodia elata	17.36
	Mother_Juven	Mother tuber of Juvenile	21.98