Detail information of GWHGAAEX002055/evm.TU.scaffold_115.81
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|294495508|ref|YP_003542001.1| | 4.00E-96 | DNA topoisomerase [Methanohalophilus mahii DSM 5219] |
| KOG | KOG1957 | 0 | DNA topoisomerase III beta |
| nr | gi|672138394|ref|XP_008792952.1| | 0 | PREDICTED: DNA topoisomerase 3-beta isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q0J0S6|TOP3B_ORYSJ | 0 | DNA topoisomerase 3-beta |
| trEMBL | tr|M0TVE7|M0TVE7_MUSAM | 0 | DNA topoisomerase {ECO:0000256|RuleBase:RU000518} |
| TAIR | AT2G32000 | 0 | DNA topoisomerase, type IA, core |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000116 | 1454038 | 1518687 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002055
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01751.21 | Toprim | 5 | 148 | 1.20E-17 |
| PF01131.19 | Topoisom_bac | 164 | 574 | 3.30E-101 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03165 | TOP3 | Homologous recombination | map03440 |
| Fanconi anemia pathway | map03460 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006265 | Biological Process | DNA topological change |
| GO:0003917 | Molecular Function | DNA topoisomerase type I activity |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003916 | Molecular Function | DNA topoisomerase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 13.340 |
| SRR2545915 | Juvenile tuber | 12.190 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.360 |
| SRR5643514 | five period of Gastrodia elata | 3.430 | |
| SRR5643515 | five period of Gastrodia elata | 2.480 | |
| SRR5643524 | five period of Gastrodia elata | 2.350 | |
| SRR5643525 | five period of Gastrodia elata | 3.240 | |
| SRR5643528 | five period of Gastrodia elata | 2.560 | |
| SRR5643658 | five period of Gastrodia elata | 2.690 | |
| SRR5643659 | five period of Gastrodia elata | 4.770 | |
| SRR5643660 | five period of Gastrodia elata | 5.400 | |
| SRR5643661 | five period of Gastrodia elata | 4.110 | |
| SRR5643662 | five period of Gastrodia elata | 4.680 | |
| SRR5643663 | five period of Gastrodia elata | 4.760 | |
| SRR5643664 | five period of Gastrodia elata | 4.770 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.200 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.100 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.890 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.900 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.270 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.940 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.210 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.910 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.030 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.110 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.230 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.230 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.40 |
| Juven | Juvenile tuber | 10.22 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.33 | |
| Mother_Juven | Mother tuber of Juvenile | 7.96 |