Gene detail

Detail information of GWHGAAEX002057/evm.TU.scaffold_115.83

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|590665535\|ref\|XP_007036771.1\|	3.63E-17	Winged-helix DNA-binding transcription factor family protein, putative isoform 2 [Theobroma cacao]
Swissprot	tr\|Q00423\|HMGYA_SOYBN	1.00E-10	HMG-Y-related protein A
trEMBL	tr\|A0A061FWN3\|A0A061FWN3_THECC	1.00E-17	Winged-helix DNA-binding transcription factor family protein, putative isoform 2 {ECO:0000313\|EMBL:EOY21272.1}
TAIR	AT3G18035	5.00E-14	winged-helix DNA-binding transcription factor family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000116	1531491	1533206	-

Transcript Sequence
>GWHTAAEX002057 ATTTTTCAACGATAAAATAGCACATCATGAACAGCTCATCGATCCCCGAGACGCGGCCTTAGTTTTTCTCGTCCATCAGATCAGAGCCGAAGGAATTAATCAACTCGTATCCGGCCGTATAAAGCGAGCGCTTCGCCTCCCCAATTTCTACACATTCTTATCCTAAATTTACCACAGCCGAACCCATGGCCGCCGCCGTTGATGCCGCCGGAACGCTCAACACCGCCGACGCTGGAAATTCTTCTGTTGTTACTGAAGCAGAAAATCCCTCTACTGACGCCGCACCTGCCCCTTCAGTTTCTAACAGTCACCCTCCTTACGAAGAAATGATACTGAGCGCATTGGAAGCGCTCAAGAGCCGCAGGGGATTGAGCTGGCATGCGATCTCCAAATACATTACCGTGAACTACTCTGAGCTTCCTTCAACCCATGCCACTCTTCTTACCGATCACCTCCGGCAGCTCCAGTCCAAAGGGTCCGTCCGCATCTTGAAACACTGCTACAAGATCGCGCAAGAATACTCGAATCGCGGTCGCCCGAGGAAGCCAACAGCTCCCAGGGAACCTAAAAAGCGTGGCCGACCTCCAAAGCTCGAAACCGATTCTGCCCCAAGGAAGAAAAGTAAGCCAGCCTCGCCGAAAAGCTTTCCATCGATGACCAATGGGCCGGTTTATATTGTTTCTCGGGCGGAGCAGCTCAGTTCTGGTCTCTTGAATAGTTTTCCTGGGGCAGTGGCTATTGTTCTTCCCAAGAGTCTTTTGAGCGAGGAGGCGGCGAGGCGTCCCCTCCTCATTTTGCCGAAGGGAATCCAGTCTTCAACTGATCCTTCGGTTGGCAAGAGAAAGCCTGGTAGGCCGAAAATTGTTGGTGTTAAGAAAAAGCTTGGTCGGCCAAGAAAGTCAGATGCGGTGCCAAAGCTGCATCTAGGGATTTATGGAGTAGGAAAGGACAGGCCTGGGCGTCCTTGGAAAGTCAGCAGATTTCTTGAGCCTGGAAGTGAACAGGAGGTATTAGGGAATTCCGGAGAGCTTCAGATGCCTGAGAGTGTTCAAGGGACTCCGGAGACTGCAAGTTTGGAGTTCAAAAAGAGGCCTGTTGGGCGTCCCAGGAAAAACATCATTGCTTGAAGGTTTTAATCTCTCTTTTCCTGGTCATCGCTAAATATTGATTTAGCTTATTTGTGTTTGCGTGTCACTTGAATTTTATCTCTTGGGTTAGGAATTATTAAATGTTATATGAGAGCCGCAGGATAGAGAGTGTGTACTTGCCTGTGTATGAATGTTGTGCTTGCCATACTAGATTTAGCGCATTGAAGAATGTGAATTTTTCTTTGTTATATCTTAAAGGTAGTTTGATTCCCTTACTTCTTGATGCTTTTGGTTCATTGATTGGTTATCTTAACAATTTAGAATTGGCATATATGAAATTTCTTGGTTTTCTATGATATTGAAGTTATGTTGGTTGCCAATAATAGGCAAATAACATGTTTGGTTCCCTGTCATGTTATTAGAGGTTGCAAAAATTATGAAACACCTCCATTTTTTGCATCAAAAAATTATTGACATCTTCATAAAATGTTAACTGGTTCAGGCTAAAGTTGCAATTTATGGTAATTTATGGTGTAAAG

Network for GWHGAAEX002057

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00538.18	Linker_histone	42	99	1.60E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006334	Biological Process	nucleosome assembly
GO:0003677	Molecular Function	DNA binding
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	44.500
SRP064423	SRR2545915	Juvenile tuber	31.620
SRP108465	SRR5643513	five period of Gastrodia elata	65.550
	SRR5643514	five period of Gastrodia elata	70.550
	SRR5643515	five period of Gastrodia elata	52.610
	SRR5643524	five period of Gastrodia elata	58.600
	SRR5643525	five period of Gastrodia elata	68.450
	SRR5643528	five period of Gastrodia elata	54.570
	SRR5643658	five period of Gastrodia elata	65.630
	SRR5643659	five period of Gastrodia elata	61.830
	SRR5643660	five period of Gastrodia elata	52.070
	SRR5643661	five period of Gastrodia elata	44.450
	SRR5643662	five period of Gastrodia elata	54.630
	SRR5643663	five period of Gastrodia elata	50.160
	SRR5643664	five period of Gastrodia elata	49.910
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	58.620
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	59.500
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	64.950
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	64.830
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	49.340
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	56.240
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	53.800
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	56.940
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	56.700
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	46.170
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	80.140
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	80.140
SRP279888	Gastro	Gastrodia elata tuber	40.40
	Juven	Juvenile tuber	46.57
	Mother_Gastro	Mother tuber of Gastrodia elata	80.64
	Mother_Juven	Mother tuber of Juvenile	55.63