Detail information of GWHGAAEX002063/evm.TU.scaffold_115.90
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|283781901|ref|YP_003372656.1| | 3.00E-27 | UBA/THIF-type NAD/FAD binding protein [Pirellula staleyi DSM 6068] |
| KOG | KOG2013 | 0 | SMT3/SUMO-activating complex, catalytic component UBA2 |
| nr | gi|743858857|ref|XP_010942467.1| | 0 | PREDICTED: SUMO-activating enzyme subunit 2-like [Elaeis guineensis] |
| Swissprot | tr|Q9SJT1|SAE2_ARATH | 0 | SUMO-activating enzyme subunit 2 |
| trEMBL | tr|M5W2D8|M5W2D8_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ00940.1} |
| TAIR | AT2G21470 | 0 | SUMO-activating enzyme 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000116 | 1742217 | 1769892 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002063
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00899.20 | ThiF | 3 | 402 | 3.00E-73 |
| PF10585.8 | UBA_e1_thiolCys | 310 | 362 | 7.10E-06 |
| PF14732.5 | UAE_UbL | 435 | 527 | 2.80E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | ThiF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10685 | UBLE1B, SAE2, UBA2 | Ubiquitin mediated proteolysis | map04120 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016925 | Biological Process | protein sumoylation |
| GO:0008641 | Molecular Function | small protein activating enzyme activity |
| GO:0019948 | Molecular Function | SUMO activating enzyme activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 28.980 |
| SRR2545915 | Juvenile tuber | 27.280 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 16.390 |
| SRR5643514 | five period of Gastrodia elata | 17.580 | |
| SRR5643515 | five period of Gastrodia elata | 15.320 | |
| SRR5643524 | five period of Gastrodia elata | 18.760 | |
| SRR5643525 | five period of Gastrodia elata | 11.970 | |
| SRR5643528 | five period of Gastrodia elata | 12.330 | |
| SRR5643658 | five period of Gastrodia elata | 11.470 | |
| SRR5643659 | five period of Gastrodia elata | 14.340 | |
| SRR5643660 | five period of Gastrodia elata | 13.850 | |
| SRR5643661 | five period of Gastrodia elata | 13.420 | |
| SRR5643662 | five period of Gastrodia elata | 10.770 | |
| SRR5643663 | five period of Gastrodia elata | 13.400 | |
| SRR5643664 | five period of Gastrodia elata | 14.160 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 20.430 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 28.630 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.750 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 26.380 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 21.480 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 23.870 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 21.840 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 23.130 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 18.060 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 16.660 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 17.240 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 17.240 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 19.55 |
| Juven | Juvenile tuber | 42.08 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 16.69 | |
| Mother_Juven | Mother tuber of Juvenile | 27.73 |