Detail information of GWHGAAEX002067/evm.TU.scaffold_115.94
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|284166917|ref|YP_003405196.1| | 4.00E-69 | sugar transporter [Haloterrigena turkmenica DSM 5511] |
| KOG | KOG0254 | 0 | Predicted transporter (major facilitator superfamily) |
| nr | gi|672142517|ref|XP_008795112.1| | 0 | PREDICTED: sugar transporter ERD6-like 16 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q8LBI9|EDL16_ARATH | 0 | Sugar transporter ERD6-like 16 |
| trEMBL | tr|M0REG5|M0REG5_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P01380_001} |
| TAIR | AT5G18840 | 0 | Major facilitator superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000116 | 1907996 | 1929526 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002067
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00083.23 | Sugar_tr | 100 | 497 | 1.10E-86 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016021 | Cellular Component | integral component of membrane |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 24.320 |
| SRR2545915 | Juvenile tuber | 45.520 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 69.820 |
| SRR5643514 | five period of Gastrodia elata | 68.290 | |
| SRR5643515 | five period of Gastrodia elata | 57.020 | |
| SRR5643524 | five period of Gastrodia elata | 63.710 | |
| SRR5643525 | five period of Gastrodia elata | 42.100 | |
| SRR5643528 | five period of Gastrodia elata | 28.110 | |
| SRR5643658 | five period of Gastrodia elata | 45.510 | |
| SRR5643659 | five period of Gastrodia elata | 30.700 | |
| SRR5643660 | five period of Gastrodia elata | 21.580 | |
| SRR5643661 | five period of Gastrodia elata | 33.470 | |
| SRR5643662 | five period of Gastrodia elata | 19.120 | |
| SRR5643663 | five period of Gastrodia elata | 31.200 | |
| SRR5643664 | five period of Gastrodia elata | 14.730 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 47.230 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 54.040 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 46.160 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 40.550 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 33.230 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 30.430 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 34.420 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 37.070 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 63.630 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 42.180 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 55.420 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 55.420 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 26.38 |
| Juven | Juvenile tuber | 49.64 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 37.35 | |
| Mother_Juven | Mother tuber of Juvenile | 42.14 |