Detail information of GWHGAAEX002070/evm.TU.scaffold_115.97
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|404496600|ref|YP_006720706.1| | 3.00E-58 | histone deacetylase family protein [Geobacter metallireducens GS-15] |
| KOG | KOG1342 | 0 | Histone deacetylase complex, catalytic component RPD3 |
| nr | gi|702497644|ref|XP_010037525.1| | 0 | PREDICTED: histone deacetylase 6 [Eucalyptus grandis] |
| Swissprot | tr|Q9FML2|HDA6_ARATH | 0 | Histone deacetylase 6 |
| trEMBL | tr|A0A059A671|A0A059A671_EUCGR | 0 | Uncharacterized protein {ECO:0000313|EMBL:KCW49234.1} (Fragment) |
| TAIR | AT5G63110 | 0 | histone deacetylase 6 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000116 | 1953240 | 1973330 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002070
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00850.18 | Hist_deacetyl | 50 | 361 | 3.60E-79 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K06067 | HDAC1_2 | Notch signaling pathway | map04330 |
| Cell cycle | map04110 | ||
| Thyroid hormone signaling pathway | map04919 | ||
| Longevity regulating pathway - multiple species | map04213 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016575 | Biological Process | histone deacetylation |
| GO:0004407 | Molecular Function | histone deacetylase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 77.510 |
| SRR2545915 | Juvenile tuber | 76.100 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 74.040 |
| SRR5643514 | five period of Gastrodia elata | 71.610 | |
| SRR5643515 | five period of Gastrodia elata | 69.500 | |
| SRR5643524 | five period of Gastrodia elata | 71.490 | |
| SRR5643525 | five period of Gastrodia elata | 79.830 | |
| SRR5643528 | five period of Gastrodia elata | 65.730 | |
| SRR5643658 | five period of Gastrodia elata | 69.290 | |
| SRR5643659 | five period of Gastrodia elata | 68.190 | |
| SRR5643660 | five period of Gastrodia elata | 74.490 | |
| SRR5643661 | five period of Gastrodia elata | 77.640 | |
| SRR5643662 | five period of Gastrodia elata | 62.960 | |
| SRR5643663 | five period of Gastrodia elata | 64.940 | |
| SRR5643664 | five period of Gastrodia elata | 63.090 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 117.070 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 92.780 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 101.730 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 143.160 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 153.250 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 190.120 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 139.260 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 144.150 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 83.530 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 106.490 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 85.480 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 85.480 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 118.45 |
| Juven | Juvenile tuber | 170.37 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 103.16 | |
| Mother_Juven | Mother tuber of Juvenile | 155.88 |