Detail information of GWHGAAEX002077/evm.TU.scaffold_115.107
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1677 | 3.00E-113 | CCCH-type Zn-finger protein |
| nr | gi|672144660|ref|XP_008796231.1| | 1.60E-154 | PREDICTED: zinc finger CCCH domain-containing protein 6-like isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q5NAW2|C3H6_ORYSJ | 2.00E-122 | Zinc finger CCCH domain-containing protein 6 |
| trEMBL | tr|M0TP53|M0TP53_MUSAM | 2.00E-134 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P10000_001} |
| TAIR | AT2G47850 | 3.00E-113 | Zinc finger C-x8-C-x5-C-x3-H type family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000116 | 2187335 | 2234693 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002077
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00642.23 | zf-CCCH | 47 | 71 | 4.00E-07 |
| PF00642.23 | zf-CCCH | 89 | 115 | 5.00E-09 |
| PF00642.23 | zf-CCCH | 136 | 161 | 1.40E-10 |
| PF00642.23 | zf-CCCH | 294 | 319 | 2.10E-09 |
| PF00642.23 | zf-CCCH | 342 | 364 | 7.40E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C3H |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0046872 | Molecular Function | metal ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.080 |
| SRR2545915 | Juvenile tuber | 19.820 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.350 |
| SRR5643514 | five period of Gastrodia elata | 7.940 | |
| SRR5643515 | five period of Gastrodia elata | 13.680 | |
| SRR5643524 | five period of Gastrodia elata | 11.990 | |
| SRR5643525 | five period of Gastrodia elata | 14.400 | |
| SRR5643528 | five period of Gastrodia elata | 22.910 | |
| SRR5643658 | five period of Gastrodia elata | 17.990 | |
| SRR5643659 | five period of Gastrodia elata | 40.790 | |
| SRR5643660 | five period of Gastrodia elata | 34.110 | |
| SRR5643661 | five period of Gastrodia elata | 43.480 | |
| SRR5643662 | five period of Gastrodia elata | 20.960 | |
| SRR5643663 | five period of Gastrodia elata | 31.260 | |
| SRR5643664 | five period of Gastrodia elata | 17.600 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.600 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.080 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.040 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.410 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.990 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.120 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.910 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.320 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.450 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.630 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.310 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.310 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 16.71 |
| Juven | Juvenile tuber | 8.09 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 17.48 | |
| Mother_Juven | Mother tuber of Juvenile | 14.71 |