Gene detail

Detail information of GWHGAAEX002078/evm.TU.scaffold_115.108

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|320353039\|ref\|YP_004194378.1\|	4.00E-86	SNF2-like protein [Desulfobulbus propionicus DSM 2032]
KOG	KOG0385	0	Chromatin remodeling complex WSTF-ISWI, small subunit
nr	gi\|743784776\|ref\|XP_010921744.1\|	0	PREDICTED: putative chromatin-remodeling complex ATPase chain [Elaeis guineensis]
Swissprot	tr\|Q7G8Y3\|ISW2_ORYSJ	0	Probable chromatin-remodeling complex ATPase chain
trEMBL	tr\|M0TP49\|M0TP49_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P09960_001}
TAIR	AT3G06400	0	chromatin-remodeling protein 11

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000116	2237683	2256983	+

Transcript Sequence
>GWHTAAEX002078 CAAGTTTTTATTGGGTCATACTGGACCGATCCGGCGATTGCCGCAAACGACCGGCTCTTTTTTTTAACCGGAGTGCACATCTTTTGGCGGGAAAAGGTGAATGGCAACCTGCCTCGCACGCTAAAGGATCTCCCACACGAGCGAGCTTATTTATTCTCTTTATCGGCCACGCTTGGTGTTTTCTGTATTCCTCGCCTCAGGAAACCCTCGAATCCTCCATGGCGAAGCGTGCTAGTTTGGAGGAACAGCCGGAAGATACACCCTCAAGTGGATCGATCTCCTCCTCTTCCGAAGATTTGGAGCCAAAGAACGAGATCTCGGAGAATCTGGAGGACGAGGAGGAGCTCGAGGCAGTCGCTGGGATGACGATCCCGGATGACGACTCACAATCAACTGAGGACGATCGAGCCGTGGGGGATGTGAAGATGGACGACGATGAGGATGAGGAGCTACAGGAAACATCCGGGGAGGCTGAAATTGGGAAGCGTGAAAGGGCCAGATTGAGAGAGATGCAAAGAATAAAGAAGCAAAAGATTCAAGAGATTTTGGATGCTCAGAATGCTGCCATTGAAGCTGACATGAATAACAAGGGGAAGGGTCGACTGAAGTATCTCCTACAACAGACAGAGATTTTTTCTCATTTTGCAAAGGGGTCTCAATCTGCAGTTGATAAAAAGCCTAGAGGAAGAGGGCGTCACGCTTCAAAACTCACGGAGGAGGAAGAAGATGAAGAGTGCCTTAAGGAGGAAGAAGATGGTTTTGGTGGTGCAGGAGGGACTCGTTTGGTATCACAACCTTCATGTATACAAGGAAAAATGAGGGACTATCAACTAGCAGGACTGAATTGGCTTATCAGATTATATGAGAATGGAATTAATGGAATTTTGGCTGATGAGATGGGTCTTGGGAAAACTCTGCAAACTATTTCACTTTTGGGTTATCTGTATGAATTTAGAGGAATAACAGGACCTCATATGGTGGTTGCTCCGAAGTCTACTCTTGGCAATTGGATGAGGGAGATCAGACGCTTCTGTCCTATTCTACGTGCTGTAAAGTTTCTTGGGAATCCTGATGAAAGGGCTCATATAAGGAATAACTTGCTAGTGGCTGGGAAATTTGATGTATGTGTTACTAGTTTTGAGATGGCCATCAAAGAAAAAGGTGCCTTAAAACGCTTTAGTTGGCGCTACATTATCATTGATGAGGCCCATCGCATAAAGAATGAGAATTCTCTACTTTCCAAAACAATGAGAATTTACAGTACAAATTATAGGCTTCTCATCACAGGCACTCCTCTCCAGAACAATCTTCATGAGCTGTGGGCTCTTCTAAATTTCCTACTTCCCGAGATATTTAGTTCAGCTGAAACATTTGATCAATGGTTCCAAATATCTGGAGAAAATGATCAACAAGAGGTTGTTCAACAACTTCATAAGGTCTTACGACCATTCTTACTTAGAAGGTTGAAATCTGACGTGGAAAAAGGCCTTCCACCTAAGAAGGAAACTATACTTAAAGTAGGGATGTCCCAGATGCAGAAACAGTATTATCGTGCTCTGCTTCAGAAAGATTTGGAAGTTATTAATGCTGGCGGGGAGCGAAAGCGTCTTCTGAACATTGCCATGCAGTTACGTAAATGCTGTAATCATCCATATCTATTCCAAGGTGCAGAACCTGGCCCACCTTATTCTACCGGAGAGCATCTTATTACTAATGCAGGAAAAATGGTGCTTCTTGACAAACTATTACCCAAGCTAAAGGAGCGAGATTCGAGAGTCCTGATATTTTCACAGATGACTAGACTTCTGGATATCTTGGAGGACTATTTAATATTTCAAGGTTATAAATACTGTCGTATTGATGGAAATACTGGTGGTGAAGAACGGGATGCTTCAATTGAGGCTTTCAATAGTCCAGGAAGTGAGAAATTTGTTTTCTTGCTTTCAACAAGAGCTGGTGGCCTTGGAATCAACCTTGCTACTGCTGATGTTGTCATTCTTTATGATAGTGATTGGAATCCACAAGTTGATTTACAAGCTCAAGATCGCGCTCATAGAATTGGTCAAAAGAAAGAAGTTCAAGTGTTCCGCTTTTGCACAGAGTACACTATTGAGGAAAAGGTTATTGAAAGGGCTTACAAGAAACTTGCTTTGGATGCTTTAGTGATTCAACAAGGCAGATTAGCAGAGCAGAAGGCTGTTAATAAAGATGAATTACTCCAAATGGTGCGATTTGGTGCTGAGATGGTATTTAGTTCCAAGGACAGTACGATAACAGATGAGGACATTGATCGGATTATAGCTAAAGGAGAAGAGACCACTGCTGAACTTGATGCAAAGATGAAAAAATTTACTGAGGATGCAATCAAGTTTAAAATGGATGACAATGCTGAGTTATTTGTATTTGATGATGAGAAGGAGGACAACAGAGTTGACTTCAAAAAGCTTGCTACTGAAAATTGGATTGAACCTCCCAAGAGAGAACGCAAGCGCAATTACTCAGACACAGACTACTTCAAGCAAGCAATGCGACCGGGAGGCTCAACAAAACCTAGAGAACCACGTATTCCACGCATGCCACAGTTGCATGATTTTCAGTTCTTTAATACGCAGAGGCTAAGTGAGCTTTATGAAAAGGAAGTTCGGTACCTTATGACTCATCAAAAAAATCAGTCAAAAGATGTGATTGCTGATGGCGATGAGTTCGAGGAGGTTGGCGAGCCATTGACTGCTGAGGAACAAGAAGAAAAAGAACAATTGCTAGAGGAGGGCTTCTCGACATGGACAAGGAGAGATTTCAATGCATTTACTCGAGCTTGTGAAAAATATGGTCGAAATGACATCAAAGGTATTGCTTCAGAAATGGAGGGTAAAACAGAAGAGGAGGTTGAAAGATATTCTAAAATCTTCAAAGAAAGATACAAGGAATTGAATGATTATGATCGAATAATTAAGAATATTGAAAGAGGTGAGGCAAGAATTTCTCGTAAGGATGAAATTATGAGAGCAATTGGGAAGAAGATGGACCGCTACAAGAACCCATGGTTGGAACTGAAAATACAGTATGGCCAGAACAAAGGAAAATTGTACAATGAAGAGTGCGATCGTTTCATGCTGTGCATGGTGCACAAACTTGGTTATGGAAACTGGGATGAATTGAAAACAGCTTTTCGCACATCACCATTGTTTCGATTTGACTGGTTTGTGAAGTCCCGAACAACTCAGGAACTTGCTAGGCGATGTGATACTCTAATTCGTTTAGTGGAGAAAGAAAATCAAGAACTTGATGAGAGAGAGAGGCAAGCTCGGAAAGATAAAAAGCTTGCTAAGAAGCCAACGCCAACTAAGAGGTCCATGATGAAGCCACCTGCTGCAGAGATCCCTGCTTTGGGCTCTTTCAAGAGGCGAAAGCAATCAGTTATGGATGACTATCTTGGTTCGGGAAGGAGATGAGGGAAGCAGCTGTAAAAATGGCTATATTTTTTTATGGTACCGTTAGGCTCACTTGAACAACATAATGAATGGCGGCTAAAGTCCGCCCTAATGTTGTTACCGGCTAACTCGGACTACTTTTGAGCGTAAAAATGGCTTCATACTTTTTGGTGGTGTCCTGCAATTCTCTCAAGTTAACTGTCGGTCGTTCGTAACACACCTGATGGTGGTTCAGACCTGTAATCCGAGAATCATAGCTAAAAAAATCTAGGTTTTTCTTAGAGTTCTGACTTGTTTAGTTTTATTAGCTGAGCAAAAGCTTCTTTAAAGATTCGATTCCTAGATTTTCAGTTTTCAAGAACTACCATTTGTTCTGACAAAAATAGTATTGCTCATAATTTGCAGAAATTGCTTAAATTGATTCATAATCTCATGCAGCCTAACAAACATGTTTTGCAGTTCAACATTTTTATTCGATAATTATTACCTGCAATTTCTTCTTTATATATTGCTACACTGCTTAACTTGCTAAAAATGTAAATTATGATATTGTTCGATACTTAGTTCACAACTAATGGTATTTGAATTTCTAGCACTTTGATGTCATGTCATGAGCAAGTTGAGGAACAGATAATTTGTTAACGGCATTTGGAATTCATGTATTTTCATTTTATTTGTCTATCAATTTTTTCTCTTTTGTTTTTATTTTATTTTGGAATGAAATCTTATGTAAACCTTATTTTGGAATGATGAATTAAATGAACTGATGAC

Network for GWHGAAEX002078

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00176.22	SNF2_N	213	480	2.20E-71
PF00271.30	Helicase_C	503	615	2.20E-20
PF09110.10	HAND	764	848	2.40E-08
PF09111.9	SLIDE	908	1018	1.80E-45

Protein Sequence

>GWHPAAEX002078
MAKRASLEEQPEDTPSSGSISSSSEDLEPKNEISENLEDEEELEAVAGMTIPDDDSQSTEDDRAVGDVKMDDDEDEELQETSGEAEIGKRERARLREMQRIKKQKIQEILDAQNAAIEADMNNKGKGRLKYLLQQTEIFSHFAKGSQSAVDKKPRGRGRHASKLTEEEEDEECLKEEEDGFGGAGGTRLVSQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLYEFRGITGPHMVVAPKSTLGNWMREIRRFCPILRAVKFLGNPDERAHIRNNLLVAGKFDVCVTSFEMAIKEKGALKRFSWRYIIIDEAHRIKNENSLLSKTMRIYSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDQWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVINAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYSTGEHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLIFQGYKYCRIDGNTGGEERDASIEAFNSPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKAVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEETTAELDAKMKKFTEDAIKFKMDDNAELFVFDDEKEDNRVDFKKLATENWIEPPKRERKRNYSDTDYFKQAMRPGGSTKPREPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMTHQKNQSKDVIADGDEFEEVGEPLTAEEQEEKEQLLEEGFSTWTRRDFNAFTRACEKYGRNDIKGIASEMEGKTEEEVERYSKIFKERYKELNDYDRIIKNIERGEARISRKDEIMRAIGKKMDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKTAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQELDERERQARKDKKLAKKPTPTKRSMMKPPAAEIPALGSFKRRKQSVMDDYLGSGRR

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0043044	Biological Process	ATP-dependent chromatin remodeling
GO:0006338	Biological Process	chromatin remodeling
GO:0005524	Molecular Function	ATP binding
GO:0031491	Molecular Function	nucleosome binding
GO:0003677	Molecular Function	DNA binding
GO:0003676	Molecular Function	nucleic acid binding
GO:0016818	Molecular Function	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	100.840
SRP064423	SRR2545915	Juvenile tuber	78.440
SRP108465	SRR5643513	five period of Gastrodia elata	40.900
	SRR5643514	five period of Gastrodia elata	36.590
	SRR5643515	five period of Gastrodia elata	31.380
	SRR5643524	five period of Gastrodia elata	33.040
	SRR5643525	five period of Gastrodia elata	35.190
	SRR5643528	five period of Gastrodia elata	24.950
	SRR5643658	five period of Gastrodia elata	40.970
	SRR5643659	five period of Gastrodia elata	37.510
	SRR5643660	five period of Gastrodia elata	41.350
	SRR5643661	five period of Gastrodia elata	32.280
	SRR5643662	five period of Gastrodia elata	31.610
	SRR5643663	five period of Gastrodia elata	38.240
	SRR5643664	five period of Gastrodia elata	35.430
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	64.330
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	57.210
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	57.910
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	79.960
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	70.390
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	84.390
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	75.370
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	75.940
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	49.870
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	54.450
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	45.700
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	45.700
SRP279888	Gastro	Gastrodia elata tuber	36.21
	Juven	Juvenile tuber	79.96
	Mother_Gastro	Mother tuber of Gastrodia elata	26.40
	Mother_Juven	Mother tuber of Juvenile	49.23