Gene detail

Detail information of GWHGAAEX002084/evm.TU.scaffold_115.114

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|338734050\|ref\|YP_004672523.1\|	2.00E-88	alpha-rhamnosidase-like protein [Simkania negevensis Z]
nr	gi\|357122645\|ref\|XP_003563025.1\|	3.78E-179	PREDICTED: uncharacterized protein LOC100823135 [Brachypodium distachyon]
trEMBL	tr\|I1GTZ5\|I1GTZ5_BRADI	7.00E-180	Uncharacterized protein {ECO:0000313\|EnsemblPlants:BRADI1G26287.1}
TAIR	AT5G57700	1.00E-157	BNR/Asp-box repeat family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000116	2361524	2365055	-

Transcript Sequence
>GWHTAAEX002084 TTAGGATAGAGTAGTAGCAAGAATGAAATCTATGTAGGAAAGATGGAATACATCCAAATTTCTGATATGAACGTTAGCTAAATAGGGATGGCAATTTAATCCGAAATTTGAACTCAAAACATGAGTTTGAGTTGAAATGCTTGACTGGAATCTTATTTAGATTTTGAGTTTGAGTCATTTCAAGTCAAGTCTGAGCTGACCCTATTGGAAGCCAGCCCTAACATTAAACTTAAATATGCTCATTATAGAGTACATTCATGATGAGTAGCATCTTGGGAAATTATCACTTGAAGATAAAACCATAAAGACTCCAACCTGAAATGAGATGAGTCGAGCTAAAATGAACAATATTTTGTTTAGTATATAACTTAAGATGTTATAGCATCCAACCACAAACTAAAATATGTTGAACATGTGTGGCCAACCTTGTAGCCCATTGTAATGCTAGCCATTAATAACTATAAAACCATTTGACTTTCATTTCTGACTTGGAGCTTTTTCTCCTCCCTTTTTGGACCACCTTCCGCACATCCTCTCAATTTTCCCTTTACCTTTAATATTAAACCACCAAAAAGTAATCACTAAAGTGAAAGGAAGATGACCGGCGGGGATTCTAGGAGGAGCAAAGTGGTGCTGGAAAGAGCACTGAGGACGGCCGTCGCCCTCGGTGCTCTCTCCCTCTTCCTCTGGAGCTCTTCCGACCTCCATTTCAACCTCCATTCCAGGAAAAATCTTCTCTTCTTCAGTCACCGGAGCTCAACGATTCGCGGATGGATGCTGGTAAAAGAGGAGTTCACCTTTCAGGTCGGAACCGCCCCTTTCAACAGCTGCCATGCTTCCACCATCTCCGAGATCGAGAGGGGCCAGTTTCTGGCGGCTTACTTTGGGGGCAGCGCGGAAGGGGCTCCGGATGTCAAGATTTGGTTGCAGCACTACATAGATGGTTGGTGGCGTCCTCCGTCCGTAGCGGATGAAGAGGCGGGGGTGCCTTTGTGGAATCCCGTGCTCTATCTGCTTCCATCCCGCGAGCTACTGCTGTTCTATAAGATCGGCCAGGAAACGCAAAAATGGAGTGGAGGCTTGAAGAGATCGGTTGATGGAGGGAAGACTTGGACTAGAAGAGAGCAGCTTCCTCCTGGAATAATCGGCCCATCAAAAAACAAGCCTCTCCTGCTGGAAGATGGCCGATTGCTCTGCGGATCCTCTGTGGAGAGCTGGAACTCTTGGGGAGCTTGGATGGAGGTTACAGCGGATAGCGGCCATTCATGGAAGAAGTATGGCCCCATATATATTGAAAATGAAACACTGGGTGTTATCCAACCTGTGCCATACAAGACTGGTAGGGGTACCTTAAGAGTCCTGCTGAGGTCCTTTGAAAATTTCACTAGGGTTTATATGTCGGAATCGTTTGATGGCGGCTTCACGTGGGGCTTTGCTCAACCTACTCAACTTCCAAATCCAAATTCAGGTATCGATGGAGTGAAACTGAGAGATGGGCGGCTGTTACTGGCATACAATACTAAGTCTAGAGAAGTGCTGAAAGTAGCATGTTCAGAGGATGATGGGGATACATGGGAAGAAGTATTTACACTAGAGGAGACAGACGGGATGGAATTCTCCTATCCTGCACTGATCCAAGCTGCGGATGACCTCATCCATATCACCTATACTTACAACAGGACACAGATTAAGCATGTTGTTCTTCAGCCCCCAGTATATGATTTACAGCATGCGCAGAGCAGCAATTTAAAAGCCCATATACATGCATAAATAGAGATTCTTGTTGTTGGACGAAGGATTGACCCCAGCGAGCTGGTTTAATTGAATGATTACCTGCAAAGTGCGTGCCTTGTAAAATTCAGGGAAAAGTAATCGAATGAAGCTTTTGTTAACATAATATGTTGCTTTTTCAACATGCTACATGTTTTTGTTTAATGTTATTTTGAGACTGAATTAGTAAGATAGATTTGGTGCCCACATATTAATTGTAGCTGAAAGAGGCTGACAATGCATATGGGTCATGCAGGTGCAATTTTTAAAGATCTGTTCTATGCTTATTAAGTGGCATGCTGAGCATTTAAGAGCGCCCAGCCATGACTCAATAGAGCCACGCCCAGGTGCGCAAAATCTGATAAAGTTAGTATGATTTATTAACTTCCCAAATTTAAACAGGGTTCACATGCATAATCATGCATCCCAGTTCTAATTATGGGGTTCTTCAGCCCTCTTAAGCCACTGAAATTGCTCTTGAGCTATAAATTTTCCAAGCCTATCCCTCCTAAAATACTTGTCTTAATCTTTTAACTCCCTTAATCAAGATGAAGATCTTGGAGACCTCACTTAGGCACTAATTTAATTTAATTTGCTTGTTCATGAAGTTATCAGCGCAGTTCTCTCATCAAGCCTAAACTTAGAAAGAAGTGTGTTCATTGGTTTCTCCACGAACTAGTGCATTCCAAAGAAGATGAGTCCAATAAGTGGACATAAAACTGAATTGAATCCAAACCACCATAACATTCCTATTAATTTTGCATTGTCATGCAGCATTCTTATTAAGTGATGTTCATACTTCTTTAATTGCTGGAAAAGAAAATAGAATTCGCACCTTGTAGTATATCCACTCCTG

Network for GWHGAAEX002084

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13088.5	BNR_2	89	355	9.50E-77

Protein Sequence

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH33

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	31.670
SRP064423	SRR2545915	Juvenile tuber	38.760
SRP108465	SRR5643513	five period of Gastrodia elata	36.790
	SRR5643514	five period of Gastrodia elata	34.460
	SRR5643515	five period of Gastrodia elata	32.790
	SRR5643524	five period of Gastrodia elata	39.050
	SRR5643525	five period of Gastrodia elata	44.770
	SRR5643528	five period of Gastrodia elata	33.180
	SRR5643658	five period of Gastrodia elata	37.170
	SRR5643659	five period of Gastrodia elata	26.880
	SRR5643660	five period of Gastrodia elata	23.790
	SRR5643661	five period of Gastrodia elata	28.410
	SRR5643662	five period of Gastrodia elata	22.030
	SRR5643663	five period of Gastrodia elata	24.690
	SRR5643664	five period of Gastrodia elata	22.590
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	25.690
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	30.690
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	25.020
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	28.870
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	26.490
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	22.790
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	26.030
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	24.610
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	28.160
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	23.800
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	26.960
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	26.960
SRP279888	Gastro	Gastrodia elata tuber	23.95
	Juven	Juvenile tuber	39.71
	Mother_Gastro	Mother tuber of Gastrodia elata	128.30
	Mother_Juven	Mother tuber of Juvenile	159.65