Detail information of GWHGAAEX002089/evm.TU.scaffold_115.119
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|383452680|ref|YP_005366669.1| | 1.00E-66 | peptidyl-prolyl cis-trans isomerase [Corallococcus coralloides DSM 2259] |
| KOG | KOG0880 | 5.00E-89 | Peptidyl-prolyl cis-trans isomerase |
| nr | gi|670429176|ref|XP_008655470.1| | 1.99E-102 | PREDICTED: peptidyl-prolyl cis-trans isomerase-like [Zea mays] |
| Swissprot | tr|Q41651|CYPB_VICFA | 6.00E-91 | Peptidyl-prolyl cis-trans isomerase, chloroplastic (Precursor) |
| trEMBL | tr|K7V8R6|K7V8R6_MAIZE | 7.00E-103 | Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493} |
| TAIR | AT3G62030 | 5.00E-89 | rotamase CYP 4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000116 | 2466878 | 2486548 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002089
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module5 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00160.20 | Pro_isomerase | 21 | 174 | 4.90E-49 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006457 | Biological Process | protein folding |
| GO:0000413 | Biological Process | protein peptidyl-prolyl isomerization |
| GO:0003755 | Molecular Function | peptidyl-prolyl cis-trans isomerase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.720 |
| SRR2545915 | Juvenile tuber | 9.660 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 31.020 |
| SRR5643514 | five period of Gastrodia elata | 38.910 | |
| SRR5643515 | five period of Gastrodia elata | 32.230 | |
| SRR5643524 | five period of Gastrodia elata | 34.830 | |
| SRR5643525 | five period of Gastrodia elata | 20.820 | |
| SRR5643528 | five period of Gastrodia elata | 14.010 | |
| SRR5643658 | five period of Gastrodia elata | 17.250 | |
| SRR5643659 | five period of Gastrodia elata | 11.370 | |
| SRR5643660 | five period of Gastrodia elata | 7.220 | |
| SRR5643661 | five period of Gastrodia elata | 9.940 | |
| SRR5643662 | five period of Gastrodia elata | 9.020 | |
| SRR5643663 | five period of Gastrodia elata | 11.220 | |
| SRR5643664 | five period of Gastrodia elata | 8.360 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.250 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 18.950 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 16.240 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.280 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.300 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.090 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.760 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.770 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 22.590 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.830 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 23.700 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 23.700 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.55 |
| Juven | Juvenile tuber | 7.20 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.91 | |
| Mother_Juven | Mother tuber of Juvenile | 4.39 |