Gene detail

Detail information of GWHGAAEX002094/evm.TU.scaffold_115.124

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|194333519\|ref\|YP_002015379.1\|	5.00E-66	NAD-dependent epimerase/dehydratase [Prosthecochloris aestuarii DSM 271]
KOG	KOG1502	1.00E-169	Flavonol reductase/cinnamoyl-CoA reductase
nr	gi\|729431487\|ref\|XP_010519769.1\|	1.94E-173	PREDICTED: cinnamoyl-CoA reductase 1-like [Tarenaya hassleriana]
Swissprot	tr\|Q9S9N9\|CCR1_ARATH	1.00E-86	Cinnamoyl-CoA reductase 1
trEMBL	tr\|A0A078DT77\|A0A078DT77_BRANA	3.00E-172	BnaA10g15690D protein {ECO:0000313\|EMBL:CDX92530.1}
TAIR	AT5G19440	1.00E-169	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000116	2630933	2644374	-

Transcript Sequence
>GWHTAAEX002094 TAATATCCATATTCACTTAAATATATTCAAACCCTAAAGTCGCATTTTTGTTTTTCAAACAAAGATATATCGTCTCTTCTCAATCTATATAATAGCACATCGGAAGCATCATCGACTCCATCCCATAGTCCATTCTACTGGGCAGCGAGAACCGAAAGACAACAGAAGAACGGAAAATATGAGTGGAGCTGTTGATAAGGTTGTCTGCGTGACCGGAGCTTCAGGCTTCATCGCGTCCTGGATCGTCAAGTTTCTTCTCCAACGGGGCTATACCGTTAAAGCCTCCGTCAGAGATCTTGCTGATTCGAGGAAAACATTGCATTTGCGATCACTTGAAGGGGCCAGCGAGAGACTGCATTTGTTTAAAGCCAATTTATTGGAGGAGGGATCGTTTGATGCTGAGATTGAAGGGTGTGCTGGTGTTTTCCATACGGCGTCGCCATTTTATCATAATGTCTCCGACCCACAGGCGGAACTTATTGATCCTGCAGTGAGGGGGACACTCAACGTTCTGAATTCCTGCTCCAAAGCCTCCACTGTTAAAAGGGTTGTCATAACGTCGTCGACGGCTGCGGTCATATACAATAATAGACCTCGAAATCCCGACGTTATTGTCGACGAGACGTGGTTCTCTGATCCAGATTTATGCAGGATTAACGAGAGTTGGTATATACTGTCGAAGACATTGGCGGAGGAGGCTGCTTGGAAATTTGCAAAGGATCATGGTATTCACGTGATTACTATAAATCCAGCAATGGTCATTGGAGGCCTTCTTCAGCCGACGCTCAACACAAGCAATGAGGCAATACTGGATTTAATAAATGGAAACTCCACATTCCCAAACGCAGCTCTCGGATGGGTGGGTGTGCAGGATGTCGCCGAAGCCCACATTCTGGCCTACGAAAATCCCGCCGCAAACGGGAGGTACTGCTTAGTTGAAAGAGTCCTCCACTACTCTCAGGTTGCGAAGATCATCGAAGAGCTTTATCCTCATTATCAGGTTCCTCAGAAAGCCTCGAATGAGAATCCGTATGCGCCGACCTATCAGGTGTCGAGAGAGAGGATGGCAAGTTTGGGATTAAGCTACACTCCATTCGAGGAGAACCTCAAGGAGGCTATCTCAAGTTTGAAGGAGAATGGCTTTGTGAAGCAGCTGTCTGAATGAGTCACTTTTTGCCGGCAAATTTTTAAACTTTTATGCTGAGATTCCCTCTTGTTTCAGTTATTATCAGAATTGGGTGTTGAAAAAATAAGTGATTATGAACATTTGGATGCTATGAATTCTATGAATTTTACTTATTTGAAAGTTATAATTGTATTGTGGATCTATCTCACTAATTCTTTTTGTTGGATACGAAAAATTGTTAACACAAATAAATCATAAAGAATAGTCACAGCACAAACATACAAATTTTGCTGAAAAATTTATTTCATACTATGATAAAAACTATAGTCACATTAGAGGATTATATCTGAGTTTAGCTACTTAATC

Network for GWHGAAEX002094

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01370.20	Epimerase	9	246	1.20E-20

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0050662	Molecular Function	coenzyme binding
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	23.340
SRP064423	SRR2545915	Juvenile tuber	70.590
SRP108465	SRR5643513	five period of Gastrodia elata	78.260
	SRR5643514	five period of Gastrodia elata	79.030
	SRR5643515	five period of Gastrodia elata	56.710
	SRR5643524	five period of Gastrodia elata	76.760
	SRR5643525	five period of Gastrodia elata	7.150
	SRR5643528	five period of Gastrodia elata	6.960
	SRR5643658	five period of Gastrodia elata	2.100
	SRR5643659	five period of Gastrodia elata	21.380
	SRR5643660	five period of Gastrodia elata	18.170
	SRR5643661	five period of Gastrodia elata	21.200
	SRR5643662	five period of Gastrodia elata	17.920
	SRR5643663	five period of Gastrodia elata	13.570
	SRR5643664	five period of Gastrodia elata	12.220
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	200.790
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	194.520
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	244.260
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	147.500
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	244.820
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	182.390
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	222.760
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	282.650
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	460.250
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	435.490
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	348.680
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	348.680
SRP279888	Gastro	Gastrodia elata tuber	13.69
	Juven	Juvenile tuber	32.22
	Mother_Gastro	Mother tuber of Gastrodia elata	65.27
	Mother_Juven	Mother tuber of Juvenile	27.04