Detail information of GWHGAAEX002096/evm.TU.scaffold_115.126
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|91772311|ref|YP_565003.1| | 4.00E-92 | DEAD/DEAH box helicase-like protein [Methanococcoides burtonii DSM 6242] |
| KOG | KOG0331 | 0 | ATP-dependent RNA helicase |
| nr | gi|672174664|ref|XP_008807455.1| | 0 | PREDICTED: DEAD-box ATP-dependent RNA helicase 20-like [Phoenix dactylifera] |
| Swissprot | tr|Q5N7W4|RH30_ORYSJ | 0 | DEAD-box ATP-dependent RNA helicase 30 |
| trEMBL | tr|W1PAL9|W1PAL9_AMBTC | 0 | Uncharacterized protein {ECO:0000313|EMBL:ERN06942.1} |
| TAIR | AT5G63120 | 0 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000116 | 2693929 | 2722608 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002096
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00270.28 | DEAD | 290 | 460 | 2.20E-48 |
| PF00271.30 | Helicase_C | 497 | 606 | 2.50E-29 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12823 | DDX5, DBP2 | Spliceosome | map03040 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 49.420 |
| SRR2545915 | Juvenile tuber | 41.370 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 43.680 |
| SRR5643514 | five period of Gastrodia elata | 28.020 | |
| SRR5643515 | five period of Gastrodia elata | 34.340 | |
| SRR5643524 | five period of Gastrodia elata | 33.460 | |
| SRR5643525 | five period of Gastrodia elata | 33.730 | |
| SRR5643528 | five period of Gastrodia elata | 44.760 | |
| SRR5643658 | five period of Gastrodia elata | 32.680 | |
| SRR5643659 | five period of Gastrodia elata | 47.590 | |
| SRR5643660 | five period of Gastrodia elata | 46.690 | |
| SRR5643661 | five period of Gastrodia elata | 43.470 | |
| SRR5643662 | five period of Gastrodia elata | 45.780 | |
| SRR5643663 | five period of Gastrodia elata | 45.600 | |
| SRR5643664 | five period of Gastrodia elata | 44.940 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 55.660 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 45.070 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 45.150 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 65.160 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 63.190 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 69.590 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 57.650 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 57.280 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 54.470 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 55.920 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 45.520 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 45.520 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 48.19 |
| Juven | Juvenile tuber | 103.55 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 47.04 | |
| Mother_Juven | Mother tuber of Juvenile | 103.67 |