Detail information of GWHGAAEX002100/evm.TU.scaffold_115.129
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672170637|ref|XP_008805381.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g03800 [Phoenix dactylifera] |
| Swissprot | tr|Q9FFN1|PP363_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g03800 |
| trEMBL | tr|B9IFS7|B9IFS7_POPTR | 0 | Uncharacterized protein {ECO:0000313|EMBL:EEF05250.2} |
| TAIR | AT5G03800_1 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000116 | 2730180 | 2732729 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002100
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 83 | 106 | 0.012 |
| PF13812.5 | PPR_3 | 109 | 153 | 0.00025 |
| PF01535.19 | PPR | 185 | 211 | 0.005 |
| PF01535.19 | PPR | 214 | 241 | 0.00024 |
| PF13041.5 | PPR_2 | 310 | 341 | 2.40E-07 |
| PF01535.19 | PPR | 343 | 373 | 0.0017 |
| PF01535.19 | PPR | 448 | 475 | 2.50E-08 |
| PF13041.5 | PPR_2 | 548 | 594 | 1.30E-09 |
| PF01535.19 | PPR | 623 | 646 | 0.13 |
| PF14432.5 | DYW_deaminase | 719 | 839 | 4.80E-27 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.620 |
| SRR2545915 | Juvenile tuber | 10.920 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 20.270 |
| SRR5643514 | five period of Gastrodia elata | 19.220 | |
| SRR5643515 | five period of Gastrodia elata | 18.290 | |
| SRR5643524 | five period of Gastrodia elata | 17.780 | |
| SRR5643525 | five period of Gastrodia elata | 13.390 | |
| SRR5643528 | five period of Gastrodia elata | 7.970 | |
| SRR5643658 | five period of Gastrodia elata | 9.580 | |
| SRR5643659 | five period of Gastrodia elata | 29.730 | |
| SRR5643660 | five period of Gastrodia elata | 35.010 | |
| SRR5643661 | five period of Gastrodia elata | 34.960 | |
| SRR5643662 | five period of Gastrodia elata | 29.620 | |
| SRR5643663 | five period of Gastrodia elata | 38.550 | |
| SRR5643664 | five period of Gastrodia elata | 38.470 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 23.540 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 20.020 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 19.940 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 19.870 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 16.660 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 15.210 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 16.960 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 14.590 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 19.400 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 17.100 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 21.780 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 21.780 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 42.41 |
| Juven | Juvenile tuber | 55.83 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 24.73 | |
| Mother_Juven | Mother tuber of Juvenile | 28.88 |