Gene detail

Detail information of GWHGAAEX002102/evm.TU.scaffold_115.131

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|166366485\|ref\|YP_001658758.1\|	3.00E-26	WD repeat-containing protein [Microcystis aeruginosa NIES-843]
KOG	KOG0644	0	Uncharacterized conserved protein, contains WD40 repeat and BROMO domains
nr	gi\|743783829\|ref\|XP_010921499.1\|	0	PREDICTED: bromodomain and WD repeat-containing protein 3-like [Elaeis guineensis]
Swissprot	tr\|Q3Y8L7\|DAW1_CHLRE	2.00E-18	Dynein assembly factor with WDR repeat domains 1
trEMBL	tr\|M0RTZ9\|M0RTZ9_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P20690_001}
TAIR	AT5G49430	0	WD40/YVTN repeat-like-containing domain;Bromodomain

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000116	2776014	2826267	+

Transcript Sequence
>GWHTAAEX002102 ATGGCACTTAGGAAGAACAAAAATTCTTGTGATCAGTCTTCTGCTGCCATGGCACCTCTGATTTTTGTAAGAAAGGTGCCTGCAAAAGGGAATTCCTTGGAAGCAGATATGAAATCATGTGCTTCTGTGGAATCTGATGTAGATATAGATCTAAGGGAAGTTTATTTCTTAATCATGCATTTCTTGTCTGCAAGTCCATGCAAGAGGACTTATGGGCAGTTTTGGAATGAGCTTTTGGAGCATCAACTTCTTCCTAGAAGGTATCATGCATGGTATTCCAGGAGCGGTGTACCAAGTGGGGATGAAGATGATGATGGCAAGTCTCTTCCATTATGCTATGTGAACTTGGTTGAGAGGTACCCACATGTCAAAAAAGATCATTTGGTAACACTTCTTAAGAAATTAATTCTTAGTTACTCCCAAGTACATGGTCTTGCATTAGGAAACACTCCAAATGCAGCTGATGTTCCTACACTACTTGGATCTGGTTCTTTCTCACTTTTATCATCTGATAGAGATAGAGATGATAAGACAACTGGCCAGCTGCCTGGATATCTGCGTTGGCCACACATGCAGGCTGATCAGGTTCGTGGGTTAAGTTTGAGGGAGATTGGCGGTGGTTTTACTAAGCACCATCGTGCACCATCTGTTCGTGCTGCTTGTTATGCCATTACTAAACCATCTACTATGGTACAAAAGATGCAATTTACAATAAAGTTGAGGGGGCATCAGAACGCTGTCTATTGTGCAACGTTTGATCGCTTGGGTCGTTATGTAATTACTGGTTCAGATGATCGTCTGGTAAAAATTTGGTCCATGGAAACTGCATTCTGCCTCGCCAGTTGCAGAGGACATGAGGGTGACATCACTGACTTGGCTGTGAGTTCAAACAATGCTTTGGTGGCATCGTCTTCAAATGACTTCATAATCAGAGTTTGGCGCTTGCCTGATGGTTTACCAATTTCAGTTTTGAGAGGACATGCTGGAACCGTAACTGCTATTGCCTTCAGTCCACGGCCAAGCTCCTGCTATCAGTTGTTATCGTCCTCTGATGATGGGACATGTAGGATCTGGGATGCTAGGTACTCTCAGCTCAGTCCACGACTTTATGTTCCAAAGCCTCCAGATACTCTAGGTAGGGTAAATGATGCCTCAGCCAATGCCGTTCAGCAAAGTCATCAAATCTTGTGTTGTGCATTCAATGCAAGTGGAACAGTATTTGTTACTGGTAGCTCAGACACATATGCAAGGGTGTGGAATGCATGCAGAAGCAGCATGGAGGACTCTGAACAACCAAACCATGAGATGGATATCTTATCAGGCCATGAAAATGATGTCAATTATGTGCAATTCAGTGGCTGTGCTGTACCATCTAAATTTTGCAGTACCGATACTTTGAAGGAGGACAACATTCCAAAGTTCAGAAACTCTTGGTTTACTCATGACAACATAGTTACGTGTTCTCGTGATGGCAGTGCAATAATTTGGATTCCACGATCTAGAAGATCTCATGGGAAAGCTGGGCGTTGGACACGGGCATATCATCTTAAAGTTCCCCCACCACCCATGCCTCCCCAACCTCCTCGTGGTGGTCCCCGCCAGAGGTTCCAGCCCACTCCTCGTGGTGTTAACATGATAGTTTGGAGTTTGGATAATCGCTTTGTGCTTGCTGCTATCATGGATTGTAGAATATGCGTTTGGAATGCTTCTGATGGAAGTTTGGTCCATTCATTAATTGGTCATACTGAATCAACTTTTGTTTTGGATGTTCATCCATTCAATCCTCGTATAGCTATGAGTGCTGGTTATGATGGTAAAACAATAATATGGGATATTTGGGAGGGAACTCCTGTACGAATATACGAAACAGGACGCTTTAAGCTTGTTGATGGAAAGTTTTCTCCGGATGGCACATCACTCGTTTTGTCTGATGAAGTTGGTCAAATATTTATAATTGCCACCGGGGAAGGAGAGTCTCGAAAAGATGCACAATATGATCAGTTTTTTCTGGGTGACTATCGGCCGCTTATTCAAGACACAAATGGAAATGTTTTGGATCAGGAGACTCAGCTTATACCTTACAGAAGAAATATGCAAGATCTCCTCTGTGATTCCAGCATGATTCCTTACCCAGAACCTTATCAGAGTATGTACCAGCAGCGTAGATTAGGTGCTCTGGGAATTGAATGGCGTCCACCCTCAGTGAAATTTGCAGTTGGACCAACTTACAATGCCCAAACGGGTGATTACCAGATACTTCCCATAGTGGACTTGGACCGGTTGGCTGAACCTTTGCCCGAAATTGTGGATGTCATTGATTGGGAATATGACAATGAATTACAGAGCGACGATACTGACTCTGAATATAATGCCACTGATGAATATTCGAGCGAAGGGGAACATGTAAGTTTGAGTGGTAGTTCCACAGGGATGGCTGAGTGTAGTGTTGATGACAGTGAGATTGATCACGCTACCAAGGAGGGCCTTAGAAGATCGAAAAGGAAGAAATTGAAGTCAGGGGTTGAGATTACAACCTTTTCTGGGAGACGAGTGAAACGAAGAAATTTGGATGAGCAAGATGGTACTATTACATCGAGGGCAGAGAAATCACGGCTTCCAAGAAATGGTAGAACAGCTGGTAGAAAAAAGAAATCAAAAGCGAAATCATTGCGCCCTCAAAGACGTGCTGCACGCAATGCTCTTAATCTTTTTTCTAAAATTACCGGCAGCTCTTCTGATGGAGAAGCTGATGACTTGGAGAGCAGTTCCTCGGAAAGTGAGTCACTGCTTCCTGATTCAAACAGCCAAAGCTATGAGTCTGCGAGGTCAACGAAGAACAGACAGATGCAAAATGGAAAAGAGATTGAAGCTTCTCGAGAGGAGCTTGATGATGCTGTGAAGCCTCCAGCAATTACCGAGAATCAAAGTTGTAATGGGACTAGGAGAAGGCTAGTGTTAAAATTGAAGACATCCAATTTTTCTGGCGCCTCTAAGTTGGAGTGCCTGGATCACGACTCAGTAAAATTAAATTCTTCTTCTAGTAATCTGAACCAACTTTACTCTGGGACATGTGAAACATCAAACCCTCCTACTGGCAAATTACAAAATTTAATATCCCAATATGGTAGCAAAATGGATATATCGGAATGTGCCGTCAACCCGGTGGGACACAAAGCTACTATGAGATGGGGCGAAGTAAAGCAGCGATCTGTTAAGCGTATGAAGTTGTATGATACTTCAACTGCTGATATGTGGAACAACACATCTAATGTATCTTTCCTTGGACCTAAGATTGCTGATCGAGATTGTAATGGCAATCAAAATTCAGAGGTTGAAGGCAGGACAACCTCCAACTCTGAAAATCAAGCTATTGGAGACGGTTTAGATAAGGAGGTTAATGAAGAAAAGGAACAGTTTGAGAATGGTGCCCAGCAAAATGGAAATGGGTACCATCTTTCTTCTTTGAATGCTTTCAAACATTCGCCAAAGACTTCCCATCAAGTTCAAGCTGCGTTGCCATTAACCTGCAGCAGAAGAAATAGAATCGAAACTCCAGATGATGAGATCAATGAACATAGGGTTGTTAACGGGGCATTAAATAATTTTGAATATAATGGTGATAAACATACTTCGTCATCAGAAAATAAACATGAAGCTAGCAATTCTCAGGAAAAGCAGAAAGTTGCTCAGCCTGTATACCCAAAACTAAGGATCAAAACAAATGGATTCAGCAAGGAAGCACGCAAGCAGAAATCTGTTGATGTAGAATGGAGAACTTCTGATGTTGATTTTGCTTCCAATAGCGAAGTAGCAGTTAAAAGTAATCTGATGTCAGCAGTTCCCGAGGAGGAATGTACAACCGGAGATAGTGCGGAACACAGCGACTGGAACAATGGATCTGATAGCTTGGAAATCCGGTGGAATAAATCATCAAGCAGGAAATATAGCAGCGTGTACAGAAGATTAAGATCATTCAGGGCTAGGAAGAATTCTAATGGCGAAATGAACACTATGGAAGAAAGCACATCAAACTCCTACAACAATGGCGGAAACATGAAAAGTGGTTACGACGATACTGTGGCTGAAGGCGGACAAGAAAGGAGGTTTACGAGTATGATGGCAAGCACCAACGATTATGGTTCTGCAAATGCGTACAAATTTAGAGGAAACTCGTCCTCAAATGCACCAGATTCAAGGAAAACATCATCAAAAACCACAGTTTGCTTAAGATCTTTCAGAAACAGACGAGAAAATCACAGCACTGGCCTCAGACCTCTTGAGAGAAGAAGAAACCAGCAGGTGCCCAAAAAGTTTTCTTGGTTGATGCTCTTAGAGCATGAGGAGGCGTATAGATATGTACCTCAAAAAGGAGATGAAGTTGCGTATTTGAGACAGGGCCATGAAGAATACATAGAGGAGCACCGGCTGCAGGATGGAGGGCCTTGGAGGCTCGTAGGAGGAAACCTGAAGGCCGTTGAGTTCTGCAAAGTCAAGGGCCTCGATTATGCTACTGTTTCTGGTTCTGGGGAAAGCTGCTGCAAGCTTACCCTCGAGTTTATAGACCCAAGTTCTGCTGGATATGGTATTTCGTTCAAATTGACTTTGCCAGAGCTGGAGACCTTTCCGGACTTCATCGTAGAAACGACGAGGTATTACGCTGCCACGGCGAGGAATTGGACCCACCGGGATAAATGCCAAGTATGGTGGAAGAACGAGGATGGGGATGGCGGGAGCTGGTGGGAGGGCAGAATCTTGGCCGTGAAACCCAAATCTCCCGAGTTCCCTGATAGCCCATGGGAGAGGTATGTGATCCAGTACAAAAATGATTCTGGACAACATCTGCACAGCCCATGGGAGCTCTATGATGCTGACATCCAGTGGGATCATCCTCGAATTGATGAGTGGGTCAGAAAGAAGCTGCTGTCTTCTCTTGATAAGATGGAGAAAACATCCATCAGAAATAAGGATCACTTTGGCATTCACAAGCTGAGTCAGGTATCGCAAAAATCCGAGTTTTTGAACAGGTTTCCTGTTCCGCTGTCGCTGGAGGTGATAAAAACAAGGCTGGAAAACAACTACTACCGCAACATTGAGTCGGTGAAGCATGACGCCTCCGTGATGGTCTCAAATGCGGAGGCTTACTTTGCCCGAAGCGTCGAGATGTCCGCAAAGATGCGGCATCTGGACGAAGCAGTCGCCAGCATCTTCACTTCTTCTTTGTAG

Network for GWHGAAEX002102

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.31	WD40	237	272	7.30E-06
PF00400.31	WD40	278	313	1.70E-06
PF00400.31	WD40	320	359	1.20E-06
PF00400.31	WD40	392	420	0.022
PF00400.31	WD40	572	611	0.15
PF00439.24	Bromodomain	1669	1717	2.40E-06

Protein Sequence

>GWHPAAEX002102
MALRKNKNSCDQSSAAMAPLIFVRKVPAKGNSLEADMKSCASVESDVDIDLREVYFLIMHFLSASPCKRTYGQFWNELLEHQLLPRRYHAWYSRSGVPSGDEDDDGKSLPLCYVNLVERYPHVKKDHLVTLLKKLILSYSQVHGLALGNTPNAADVPTLLGSGSFSLLSSDRDRDDKTTGQLPGYLRWPHMQADQVRGLSLREIGGGFTKHHRAPSVRAACYAITKPSTMVQKMQFTIKLRGHQNAVYCATFDRLGRYVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNALVASSSNDFIIRVWRLPDGLPISVLRGHAGTVTAIAFSPRPSSCYQLLSSSDDGTCRIWDARYSQLSPRLYVPKPPDTLGRVNDASANAVQQSHQILCCAFNASGTVFVTGSSDTYARVWNACRSSMEDSEQPNHEMDILSGHENDVNYVQFSGCAVPSKFCSTDTLKEDNIPKFRNSWFTHDNIVTCSRDGSAIIWIPRSRRSHGKAGRWTRAYHLKVPPPPMPPQPPRGGPRQRFQPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNASDGSLVHSLIGHTESTFVLDVHPFNPRIAMSAGYDGKTIIWDIWEGTPVRIYETGRFKLVDGKFSPDGTSLVLSDEVGQIFIIATGEGESRKDAQYDQFFLGDYRPLIQDTNGNVLDQETQLIPYRRNMQDLLCDSSMIPYPEPYQSMYQQRRLGALGIEWRPPSVKFAVGPTYNAQTGDYQILPIVDLDRLAEPLPEIVDVIDWEYDNELQSDDTDSEYNATDEYSSEGEHVSLSGSSTGMAECSVDDSEIDHATKEGLRRSKRKKLKSGVEITTFSGRRVKRRNLDEQDGTITSRAEKSRLPRNGRTAGRKKKSKAKSLRPQRRAARNALNLFSKITGSSSDGEADDLESSSSESESLLPDSNSQSYESARSTKNRQMQNGKEIEASREELDDAVKPPAITENQSCNGTRRRLVLKLKTSNFSGASKLECLDHDSVKLNSSSSNLNQLYSGTCETSNPPTGKLQNLISQYGSKMDISECAVNPVGHKATMRWGEVKQRSVKRMKLYDTSTADMWNNTSNVSFLGPKIADRDCNGNQNSEVEGRTTSNSENQAIGDGLDKEVNEEKEQFENGAQQNGNGYHLSSLNAFKHSPKTSHQVQAALPLTCSRRNRIETPDDEINEHRVVNGALNNFEYNGDKHTSSSENKHEASNSQEKQKVAQPVYPKLRIKTNGFSKEARKQKSVDVEWRTSDVDFASNSEVAVKSNLMSAVPEEECTTGDSAEHSDWNNGSDSLEIRWNKSSSRKYSSVYRRLRSFRARKNSNGEMNTMEESTSNSYNNGGNMKSGYDDTVAEGGQERRFTSMMASTNDYGSANAYKFRGNSSSNAPDSRKTSSKTTVCLRSFRNRRENHSTGLRPLERRRNQQVPKKFSWLMLLEHEEAYRYVPQKGDEVAYLRQGHEEYIEEHRLQDGGPWRLVGGNLKAVEFCKVKGLDYATVSGSGESCCKLTLEFIDPSSAGYGISFKLTLPELETFPDFIVETTRYYAATARNWTHRDKCQVWWKNEDGDGGSWWEGRILAVKPKSPEFPDSPWERYVIQYKNDSGQHLHSPWELYDADIQWDHPRIDEWVRKKLLSSLDKMEKTSIRNKDHFGIHKLSQVSQKSEFLNRFPVPLSLEVIKTRLENNYYRNIESVKHDASVMVSNAEAYFARSVEMSAKMRHLDEAVASIFTSSL

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.250
SRP064423	SRR2545915	Juvenile tuber	13.940
SRP108465	SRR5643513	five period of Gastrodia elata	9.740
	SRR5643514	five period of Gastrodia elata	10.090
	SRR5643515	five period of Gastrodia elata	11.530
	SRR5643524	five period of Gastrodia elata	9.860
	SRR5643525	five period of Gastrodia elata	13.420
	SRR5643528	five period of Gastrodia elata	10.870
	SRR5643658	five period of Gastrodia elata	12.070
	SRR5643659	five period of Gastrodia elata	10.400
	SRR5643660	five period of Gastrodia elata	11.460
	SRR5643661	five period of Gastrodia elata	9.670
	SRR5643662	five period of Gastrodia elata	10.430
	SRR5643663	five period of Gastrodia elata	10.880
	SRR5643664	five period of Gastrodia elata	12.580
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.590
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.470
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.540
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	11.470
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	13.160
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	13.800
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	12.340
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	12.010
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.850
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.080
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.520
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.520
SRP279888	Gastro	Gastrodia elata tuber	14.72
	Juven	Juvenile tuber	15.94
	Mother_Gastro	Mother tuber of Gastrodia elata	17.14
	Mother_Juven	Mother tuber of Juvenile	21.73