Detail information of GWHGAAEX002108/evm.TU.scaffold_115.136
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|320352651|ref|YP_004193990.1| | 2.00E-173 | argininosuccinate lyase [Desulfobulbus propionicus DSM 2032] |
| KOG | KOG1316 | 0 | Argininosuccinate lyase |
| nr | gi|672125640|ref|XP_008786242.1| | 0 | PREDICTED: argininosuccinate lyase, chloroplastic [Phoenix dactylifera] |
| Swissprot | tr|Q9LEU8|ARLY_ARATH | 0 | Argininosuccinate lyase, chloroplastic (Precursor) |
| trEMBL | tr|M0RPJ7|M0RPJ7_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P05170_001} |
| TAIR | AT5G10920 | 0 | L-Aspartase-like family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000116 | 2915262 | 2926374 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002108
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00206.19 | Lyase_1 | 29 | 323 | 1.40E-73 |
| PF14698.5 | ASL_C2 | 386 | 454 | 3.10E-22 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0042450 | Biological Process | arginine biosynthetic process via ornithine |
| GO:0004056 | Molecular Function | argininosuccinate lyase activity |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 23.820 |
| SRR2545915 | Juvenile tuber | 22.240 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 18.730 |
| SRR5643514 | five period of Gastrodia elata | 25.010 | |
| SRR5643515 | five period of Gastrodia elata | 18.070 | |
| SRR5643524 | five period of Gastrodia elata | 21.260 | |
| SRR5643525 | five period of Gastrodia elata | 10.940 | |
| SRR5643528 | five period of Gastrodia elata | 10.620 | |
| SRR5643658 | five period of Gastrodia elata | 9.040 | |
| SRR5643659 | five period of Gastrodia elata | 16.810 | |
| SRR5643660 | five period of Gastrodia elata | 17.370 | |
| SRR5643661 | five period of Gastrodia elata | 16.840 | |
| SRR5643662 | five period of Gastrodia elata | 15.770 | |
| SRR5643663 | five period of Gastrodia elata | 17.310 | |
| SRR5643664 | five period of Gastrodia elata | 14.950 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 23.110 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 25.670 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 23.400 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 18.640 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 18.330 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 18.600 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 18.820 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 20.620 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 30.950 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 23.880 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 31.630 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 31.630 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 21.04 |
| Juven | Juvenile tuber | 30.77 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 25.46 | |
| Mother_Juven | Mother tuber of Juvenile | 22.39 |