Gene detail

Database	Orthologs	E value	Annotation
COG	gi\|118431049\|ref\|NP_147234.2\|	8.00E-08	transcription factor S [Aeropyrum pernix K1]
KOG	KOG2691	1.00E-57	RNA polymerase II subunit 9
nr	gi\|672115892\|ref\|XP_008781098.1\|	4.52E-63	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Phoenix dactylifera]
Swissprot	tr\|Q6NLH0\|RPB9A_ARATH	3.00E-58	DNA-directed RNA polymerases II, IV and V subunit 9A
trEMBL	tr\|M0REP7\|M0REP7_MUSAM	1.00E-62	DNA-directed RNA polymerase subunit {ECO:0000256\|PIRNR:PIRNR005586, ECO:0000256\|RuleBase:RU004351}
TAIR	AT3G16980	1.00E-57	RNA polymerases M/15 Kd subunit

Scaffold	Start	End	Strand
GWHAAEX00000116	2929863	2959293	-

Transcript Sequence
>GWHTAAEX002109 AACCAAGCGCATCTCTTACCGGCCACAAGCCTTTAAACCCTTAAACCCTGTCGAACTAGGGTGACTCAAAAACCATTGCTCTCGGATTTACAGTGACGAGAAGAGTCCGACTGCTGAAATCGAGTCAGCTGCCATGAGCATCCTCAAGTTCTGTAGCCAATGCCATAACATTCTGTACCCTAAGGAAGACAAGGAGCGCAAGATCCTGCTATATGCCTGCGGTAACTGCGATCACCAGGAAGAGGCTGATGACAATTGTGTCTATAAATGTGTGATCAATCATTCAATTGGCGAGCGAAGTCATGTCTTACAGGATGTGGCAGCTGATCCTTCTCTTCCTCGCACAAAATCGGTTCGATGTGCTGTGTGCAATCACCCGGAAGCAGTTTTTTTCAAGGCTACCCCCACTGGGGAAGAGGGAATGGCATTATACTTTATATGCTGCAATCCAAGCTGTGGAAATAGGTGGAGAGATTGATTAAAGTTGTAATGGCATGCCCTTTTTTGCTATCTTCCTCTTGGAGAACTTCGAGCTTTTAGCCAAAACCGCAATGCATCTGTATGAGAGATTGCTTGGTTGTATACATATAATAAGAATTTAAGGGTTATATACAAAGCACATTATTCCTTTTTAATGTGGCGCCTTCTCTTTTATTTCGTACATTATTTGACTACTAGATTTGGATGCTATATTGCATTTTTTTTTTTTTTTTTTTTT

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Module ID	Function Annotation
Module1

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02150.15	RNA_POL_M_15KD	4	41	4.10E-11
PF01096.17	TFIIS_C	75	113	4.70E-07

Protein Sequence

Gene family	subfamily
--	--

KO	Enzyme	pathway	mapID
K03017	RPB9, POLR2I	RNA polymerase	map03020

GO term	Ontology	Name
GO:0006379	Biological Process	mRNA cleavage
GO:0006351	Biological Process	transcription, DNA-templated
GO:0008270	Molecular Function	zinc ion binding
GO:0003676	Molecular Function	nucleic acid binding

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	27.660
SRP064423	SRR2545915	Juvenile tuber	37.600
SRP108465	SRR5643513	five period of Gastrodia elata	17.100
	SRR5643514	five period of Gastrodia elata	17.760
	SRR5643515	five period of Gastrodia elata	16.440
	SRR5643524	five period of Gastrodia elata	15.770
	SRR5643525	five period of Gastrodia elata	5.340
	SRR5643528	five period of Gastrodia elata	3.010
	SRR5643658	five period of Gastrodia elata	2.380
	SRR5643659	five period of Gastrodia elata	31.890
	SRR5643660	five period of Gastrodia elata	31.070
	SRR5643661	five period of Gastrodia elata	36.610
	SRR5643662	five period of Gastrodia elata	31.450
	SRR5643663	five period of Gastrodia elata	36.820
	SRR5643664	five period of Gastrodia elata	34.110
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.910
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	31.880
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	20.720
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	16.310
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	20.110
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	16.080
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	21.050
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	20.820
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	31.900
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	23.140
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	28.590
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	28.590
SRP279888	Gastro	Gastrodia elata tuber	46.85
	Juven	Juvenile tuber	37.52
	Mother_Gastro	Mother tuber of Gastrodia elata	5.68
	Mother_Juven	Mother tuber of Juvenile	13.06