Gene detail

Detail information of GWHGAAEX002114/evm.TU.scaffold_115.142

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1929	4.00E-102	Nucleotide excision repair factor NEF2, RAD4/CUT5 component
nr	gi\|672116331\|ref\|XP_008781324.1\|	1.43E-165	PREDICTED: LOW QUALITY PROTEIN: BRCT domain-containing protein At4g02110 [Phoenix dactylifera]
Swissprot	tr\|O04251\|Y4211_ARATH	2.00E-102	BRCT domain-containing protein At4g02110
trEMBL	tr\|D7U2G7\|D7U2G7_VITVI	8.00E-161	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI36933.3}
TAIR	AT4G02110	4.00E-102	transcription coactivators

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000116	3065013	3087929	-

Transcript Sequence
>GWHTAAEX002114 GCAGTACTGGAAAAGTTTTCCCTCTCATTTTGCGTACGCAAGACGGGACGCACTAAAACCCTATCAATTTAGGAGGGAAAGTGCAAGACCAATCTACAAGAGAAAGAACGCCAGATTACACCGCGTTTGATATTCCTTTGAACTGCGTTTGTTTTTTTTTTCTCTTGCAGCCTCTATCGCGGGCTTGAATCGTTTTAGAAGAAATGCGCCGAGACCAAGGCGGTGGTGCGAGGTCAAACAGCCCGAAGAAGATTTTTGCAGGCGTCCGCTTTGTTCTCTTTGGATTTGACTCCGTTTCCGAAGCCCAGTACCGGTTTGAACTTGTGAATAGAGGCGGATTTGATGTTGGTCGGTATGATTCCAGTTGTACCCATGTGATTGTATCTGGCCGTGTTTTTGATGAGCCTGTTTGTGTGGCAGCAAGAAATGATGGGAAAATGTTGATTACAGAATTGTGGATTGATGACAGTTTGAGTTTTGGGATGCTTGCTGATTACACAAAGGTTTTATACAGACCTGTTAGAGATTTGAGTGGTATTCCTGGCAGTGAGTCATTAAATATTTGTTTGACAGGGTATCAGAGACAAGAACGAGATGATATCATGAGAATGGTTTCTTTGATGGGGGGGCATTTTTCAAAGCCTTTGATAGCAAACCAAGTAACTCATCTCGTTTGCTATAAGTTTGAAGGTGAAAAATATGAACTTGCCAAAAAAGTTAATATAAAGCTTGTCAATCATCGTTGGCTGGAGGACTGCTTGAAGGCTTGGGATATCCTGCCAATAGATAACTATGGGCAAAGTGGTTTGGAGCTAGAGTTGCTTGAAGCTGCAGCTATGGATACTGATGATGAAGCCGTGGATGCAGGCAATAGGGTTACAGTGCAGAGAAGTATTACAGAATCCCATAGTTTAAGAGGTGAAATATCAGTTAACATTGGGTCTGACACTTTGGTGGACAAAATTAGCCTTGGCCTAAAGAAAAATGCTTTATCTGCAAAGCCGGGTGATCTTTCTGTGAATAGTCTGTTGATTTCTACTCCTCATAAAGTCAACAGTTCTAGAAAAGCTATTGATATTTGTGGCATTGAAGACAAGGCACCTAATTTAAATCATCATCTAGAATGTAGGGTAGCTGAAAAACTTTCTGATAATTTTGACTCTGCAATGATAAATAGCAAATCAAAGGATACCAATCTCTTAGATTCAAACTCAAAATGTAATCACTTGTCTTCTAATGTAAGGAACAGTTTGATGAATGAAACTTCATGTGAAAAGGACATCAAATCGAGCTCCCCGAGCTACCTAAGAAAAATTACTGAGAAAGCTGTTGCTCTTGAAGCTGTTCCACATATAGGACCACCTGAAGACTTAAACATTGCAGGAGAAGCTAGAGCTAGTTACGCAGAATCAAAGGATGCTGCTACAAAGGCATGCATGTATGACAGTTTGCAAAATTCAACAAGTTGTTTAAATAAACCACATGTTGATAGAAATACTCAGTCCTTGCCTAAGAAGAGGAAACTTTCTGGTTCAAAATTAAGTTCAAAATTGATAAAGATAGGCCAGGCTTCTAGTAATTCTTTATTGTTAGATGCCTCAAAAAGTGTTAGTTCTGAAGAACTAAATTTTCCAAAGCCTCAACAACAAGAACCCAAAAGTTTTACCCAAAATGAGAGTAGTATGAACATCTGCCACATGGTAGAGATCAATGATGCATTTCCTCAAACAGAAATGCTCTCTATTTCAAATACTTGTCTGAGATCTCCACTGTTGGCACAAAAGGATTCAGGAAATTGTGTGAAACAGAATCCTTCCACAAGTACAAGTTTAGGTCAAATTAAATCTGTTAATGCTCACCATCATGAAATTGAACATGATCTTGCGGATTCTAATGGTTTTGAAGTTACTGTTTTTGCACAACCCAGGGAAAGTGAACCTGGTACATTGCCAAAATCTGGTTCGCTAAAATACAAGAGAAAATTTCTTAAAAATTGGCAGCCTGCTTCTTCAGTGAATATATCCAGTAGTTCCAGTTCAATGCCTGATAATAAGGATGAACTGTTAAACGTTCCCTCTAACTCCACATTAGATGAGACAGCAAGTCCTACGCATAAACCTGTGTCTGGAGTTGGAACTTTGTATGACATCCCTTTTTCTAAAGCTATGGTACTCTCAGATTGTTCGCTAAATAATGAGCCTGAGAAAACTGAGGATAGAAGAATGGGAAATGATCTAAGAATCCTTAGGCCACCATCAGCTGGTAGTGGAAATGCAAATGAAGAAACTATTGGTGTGAAATTGTTTGAAACATCTTTGAAAAGCATGGTGAAATCAGGTTCCGCTGCCAAATCTCAGAACGTTGATGGCATTTCAATGAAATATAATACTGATATATGCAATGAAGCATCTGAACACCAGGAAAACCCAGGTGAGGATCAAGAGGATTTTCCCTTTGAATTGAAGGGCACCAAGGTAAAAGGTTCAATTAGTACTGAGATTAATGGATTTTGTGAAAATGGTAAAGACAATAAAGGCTCCCTTCTTAACAACCAAAAGGGCCGCAGGCCCAAGAAATGCAGAGAAAATTGTAAAAATAAACATTCTAGTGATTCACTCAAAAGCATCAATTTGACCAAGTCTGCCATAAAATCAGGAAATGGCGTAGTGAAATTGGGAAATATTGACAGTCTTAAAGAAAATATTGAGAAGGAATATTTACCTATGAAGGAGAAGGGTGAAGTGGAACAATGTCATTCACTTGCAAGCAACACTATTATTGATGTACTAGATGAAAATCACCTGGATCCAGAAAAGGAGAACAAGCTGATGGATAGCTGTAATTTGATTATCAAAGAAGATGAGGATTGCGGTTATATGGTGAAAAAGATATGCAAGTCTGATCTTGGTATAAAATGCTCACGCAATGATAATATCGTTTCTATTCCAAAACTGACCGATATGGGTACAGTGATTCCTAGCCCTACCGCTTGGTTTCTATTAAGCGGACATCGATCTCAAAGAGTTGAGTTTCAGAAAATTATTAAAAGGCTCAGAGGAAAGCTGTGCAAGGATTCTCATAATTGGGCTTACGAGGCTACTCATTTTATTGTTCCAGATTATGTTCGACGAACACAAAAATTCTTTGCTGCTGTAGCAGCAGGAAGATGGATTCTCAGATCGGATTACTTGACTGCTAGTAATGAAGCTGGCAAGTTCTTAATAGAAGAGCCTTTCGAATGGCACAAAAATGGACTTAGTGAGGATGGCGCCATCAGTTTAGAAGCCCCCCGAAAGTGGCGCACATTAAGGGAAAGGACCGGCCATGGTGCGTTCTATAAGATGAGGATTATCATTTATGGAGAATGTATTGCCCCCTCGCTGGACACCCTGAAACGAGTCGTGAAAGCTGGAGATGGCACCATTTTGGCCACCTCCCCGCCGTACACCCGCTTTCTAAATTCCGGCATAGATTATGCGATCGTGAGTGCGAGCATGCCGCCGATCGACAAATGGGTTCAGGAGTTATTGAGGCATGAAATACCTTGTGTCCTTCCCGAATACTTGGTCGAGTACGTATGCAAGCCAGGCTATTCTCTCGAGAAACATGTTCTTTATAGGACCCACACATGGGCGACCAAGTCTTTTGAGAATATGGTGATTCGCTCGTCTGAAGTTGATTATGACCAACCTTCGATAGGAGACAGTTTTGTGTCTCTTAAATGTGTGGTTTGCGGGTCACCGGATAGAGAGGAATTGATGCTGATTTGTGGGGACGATGATGGCGCTCGCGGCTGCGGGGTTGGAACTCACATAGACTGCTGTGATCCCCCTCTCTCAGCAGTTCCAGAGGGTGATTGGTTCTGCTCCAACTGCAGCAGAAATATGGGGCAGAAAAAGATCCTTGCCAAGTCTACAAAAGCAAAGCGTAAGAAAAGCAACTATTGATTCTTCTGAGGTTAATTCTGTTAGTTTTATGTGTCATAATAAATTTAATTCTGATCTTTAAACTTGTTATGCTGAACTGCTGGAATGTTAAATTAGCCGTCTGTTTCAGCTTTTTTGTATATATTCCATTTTATTTTGCTGTGTATTGTATTTAAGATACTTTTGTATCTATTATAGAGAAATAAATATAGCAG

Network for GWHGAAEX002114

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12738.6	PTCB-BRCT	118	181	4.50E-23
PF00628.28	PHD	1174	1226	5.10E-08

Protein Sequence

>GWHPAAEX002114
MRRDQGGGARSNSPKKIFAGVRFVLFGFDSVSEAQYRFELVNRGGFDVGRYDSSCTHVIVSGRVFDEPVCVAARNDGKMLITELWIDDSLSFGMLADYTKVLYRPVRDLSGIPGSESLNICLTGYQRQERDDIMRMVSLMGGHFSKPLIANQVTHLVCYKFEGEKYELAKKVNIKLVNHRWLEDCLKAWDILPIDNYGQSGLELELLEAAAMDTDDEAVDAGNRVTVQRSITESHSLRGEISVNIGSDTLVDKISLGLKKNALSAKPGDLSVNSLLISTPHKVNSSRKAIDICGIEDKAPNLNHHLECRVAEKLSDNFDSAMINSKSKDTNLLDSNSKCNHLSSNVRNSLMNETSCEKDIKSSSPSYLRKITEKAVALEAVPHIGPPEDLNIAGEARASYAESKDAATKACMYDSLQNSTSCLNKPHVDRNTQSLPKKRKLSGSKLSSKLIKIGQASSNSLLLDASKSVSSEELNFPKPQQQEPKSFTQNESSMNICHMVEINDAFPQTEMLSISNTCLRSPLLAQKDSGNCVKQNPSTSTSLGQIKSVNAHHHEIEHDLADSNGFEVTVFAQPRESEPGTLPKSGSLKYKRKFLKNWQPASSVNISSSSSSMPDNKDELLNVPSNSTLDETASPTHKPVSGVGTLYDIPFSKAMVLSDCSLNNEPEKTEDRRMGNDLRILRPPSAGSGNANEETIGVKLFETSLKSMVKSGSAAKSQNVDGISMKYNTDICNEASEHQENPGEDQEDFPFELKGTKVKGSISTEINGFCENGKDNKGSLLNNQKGRRPKKCRENCKNKHSSDSLKSINLTKSAIKSGNGVVKLGNIDSLKENIEKEYLPMKEKGEVEQCHSLASNTIIDVLDENHLDPEKENKLMDSCNLIIKEDEDCGYMVKKICKSDLGIKCSRNDNIVSIPKLTDMGTVIPSPTAWFLLSGHRSQRVEFQKIIKRLRGKLCKDSHNWAYEATHFIVPDYVRRTQKFFAAVAAGRWILRSDYLTASNEAGKFLIEEPFEWHKNGLSEDGAISLEAPRKWRTLRERTGHGAFYKMRIIIYGECIAPSLDTLKRVVKAGDGTILATSPPYTRFLNSGIDYAIVSASMPPIDKWVQELLRHEIPCVLPEYLVEYVCKPGYSLEKHVLYRTHTWATKSFENMVIRSSEVDYDQPSIGDSFVSLKCVVCGSPDREELMLICGDDDGARGCGVGTHIDCCDPPLSAVPEGDWFCSNCSRNMGQKKILAKSTKAKRKKSNY

Gene family

Gene family	subfamily
Transcription Factors Family	PHD

KEGG pathway

KO	Enzyme	pathway	mapID
K10728	TOPBP1	Homologous recombination	map03440

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.340
SRP064423	SRR2545915	Juvenile tuber	3.660
SRP108465	SRR5643513	five period of Gastrodia elata	4.130
	SRR5643514	five period of Gastrodia elata	4.880
	SRR5643515	five period of Gastrodia elata	3.830
	SRR5643524	five period of Gastrodia elata	3.960
	SRR5643525	five period of Gastrodia elata	1.250
	SRR5643528	five period of Gastrodia elata	1.260
	SRR5643658	five period of Gastrodia elata	2.060
	SRR5643659	five period of Gastrodia elata	1.570
	SRR5643660	five period of Gastrodia elata	1.460
	SRR5643661	five period of Gastrodia elata	1.900
	SRR5643662	five period of Gastrodia elata	0.550
	SRR5643663	five period of Gastrodia elata	1.080
	SRR5643664	five period of Gastrodia elata	0.620
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.090
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.320
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.040
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.910
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.910
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.020
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.120
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.210
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	8.640
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.270
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.820
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.820
SRP279888	Gastro	Gastrodia elata tuber	0.94
	Juven	Juvenile tuber	2.58
	Mother_Gastro	Mother tuber of Gastrodia elata	1.04
	Mother_Juven	Mother tuber of Juvenile	1.66