Gene detail

Detail information of GWHGAAEX002116/evm.TU.scaffold_115.144

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|556569374\|ref\|YP_008737799.1\|	2.00E-27	serine/threonine protein kinase [Actinoplanes friuliensis DSM 7358]
KOG	KOG0606	0	Microtubule-associated serine/threonine kinase and related proteins
nr	gi\|672158940\|ref\|XP_008799218.1\|	0	PREDICTED: uncharacterized protein LOC103713940 [Phoenix dactylifera]
Swissprot	tr\|Q9LE81\|IRE_ARATH	0	Probable serine/threonine protein kinase IRE {ECO:0000305}
trEMBL	tr\|J3NF48\|J3NF48_ORYBR	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:OB12G26060.1}
TAIR	AT5G62310	0	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000116	3105724	3133834	-

Transcript Sequence
>GWHTAAEX002116 TTCAAATCCATTATAGTCGATGCGAAGGCTCAGATCATGGCTTGCACGTTCGCATAGAAAGAAAATAGCTGGAAATAGCGATCTAGTTGAAGCAGCACCACATGTCTCAGAAGCGCTTCTTCCGCGGAATTCTGAACATAAATCATCGATCACCACAGCCATGACATGATAATCCACGCATTGCGATTTGTTATTCATTAAGTTTCCTTCTCTTATTGCTTTCGAGAATTTGCTGCTGTTTCAAGGGAGGAAATCAGAGCAGAGTTGAATCACTCAACCCATCGTCGGGAAGCCTTGTTCATCGTTCCCAAGAAAATGGAGGGTGCGCGCCGCGTCGTCTTTGATGCCGTGAAGGAGATGCAATCCCCGCGCTTCCGCGCCATTATGCGCGCCACAAGTGGCCGTCGGAAGCGGTCTCCCATCGATGTCAAGAGCTTCTCCCACGAATTGAGCTCCAAGGGCGCCAGTTCTTTGCCATTTCGCAAGCTTCGCGGCCTCTCAAGTCCCGAGGATGTAATGGTGGTAATCAAATCCAAGTTTAAACATCTTAAAGAGGAGGTGAACGCAGAGTTGGGTGTGTTCGCTGGGGATTTGGTTGGAATTCTTGACAAAACGACGGAGGAGCGTCCGGAGTGGAGGGAACTTATAGAGGATCTTCTCGTTATCTCCCAGAAATGCGCGGAGATGTCACCGGACGAGTTCTGGATCAAATGCGAAGGGATAGTTCAGAACCTAGACGATCGAAGGCAGGAGCTTCCCATGGGAACCCTTAAGCAAGTGCACACTCGAATCCTCTTCATCCTCACGAGATGTACCCGCCTAGTGCAATTTCAGAAGGAGGGTGCTTACGGCGAGGAGGAGCACGCTCTTGGCCTCCACCAGTTCAGTGACCTTGGATTTTATCCTGATCAGACTGATTCTGGGCAAGCTCTTAAGAACCAGATAACTGCCAAGGACATCATGGAGAAGCTCATGAGGGCAAAAATTCAGGAGAAAAGGCTCAAATTGTCCCCCACGAGTAGGGATAGAATATCTTCTTGGAAGAAGCTTCCCTCTGCTGCGGAGAAGAATCAGAAGAAGGGCGGAGAAGAGGATACTGCTTCCAGGTTGAAAAAGGCGCCTTCATTGCAGGGGCAGGAAAAAGCAGAGCTTGTCTTTGATGAGAAAGTAGAAGCTTTTAAAACCTCTGAGAAGCCAACTAAATGCTCAGGTGATACAACTATTCAGGGTGAGAGACCTGATGGGATTCTTGATGGCAAAAAGGTGATGATATGCCGCATTTGTGATTTTGAGATACCGACAATGCATGCTGAAGGGCACTTCAAAGTATGTAACATCGCTGATAGATGCGACTGCAAGGGATTAACGGTTGATGAACGGCTTTTGAGAATTGCAGAAGTTCTAGAGAAAATTATCGATCAGTGCAATCCAAAAGAGCGCGAAGACGTTTCTAAAGCTAGACATTCCTGCCAGATTGGAGAGTTTCATGAGCCAAGCTTTACTAGAAACAACTATTGTCACTCTACCGATATTGGACAGCTCCTTCCAAATTCATCTACTGTGAGTGATATTGATATTTTGGGATCTAGCGCGGGTATGCATGATCCGGGGATCTTGGCATCTTCATCTGGGAGCATAAGCCCTCAATCGCCTTTGGTGACACCTCGAATCAGCCAACTTAATTTGCTCTTGATTGTCAAGAGCTTAGTTCTTGAGCTTGAGAATTTTCAACAGATTGAAAGTTTACTGATTATTGTTCGTAGCATTGAGAGTATTAAAAACTGTGATTACAACTCATTGGAGAACTTGAGCTCCTATTTGGAGCGCTTAAATGCAGTTATTGGTAATAGAACGGTGGATGGCCTCATTATTGAGACATTTGGAAAATGTATAGAGAAATTGCTACAGGAAAAATTCATACAACTCTGTGGTCAAATTAATGATGGAGATAAGGACACATATGTTGATGAAGATGCTTATGTAGAAAGTGATAGTGGTGGCCGTAGTTCACGAACAAGCCCTTTGAGCACTAAAATTAAGGATCGGACATCCATTGAAGATTTTGAAATTATAAAACCGATCAGCCGAGGGGCATTTGGAAGAGTTTTTCTTGCAAAAAAAAGAATTACTGGCGACCTTTTTGCAATCAAGGTTCTTAAAAAGGCTGATATGATTCGTAAGAATGCAGTTGACAGTATTTTAGCTGAACGTAACATCCTTATTTCAGTTCGAAATCCCTTTGTGGTACGGTTTTACTATTCCTTCACATCTCGAGAAAACCTTTATTTGGTGATGGAGTATCTAAATGGTGGAGACCTTTATTCTCTACTGAGAAATTTAGGCTGTTTAGGTGAAGAAATGGCTCGTTTATACACAGCTGAATTAGTTCTTGCATTGGAATACTTGCATTCATTGAATGTCATTCATCGAGATCTAAAACCAGACAATTTATTGATAGCTCGTGATGGCCATATAAAGTTGACTGATTTTGGGCTATCTAAAGTTGGTCTTATCAGCAGCACTGATGATTTATCTGGACCAGATGTTAGTAGTTCTGTAATTTTGGATTTTGATCGCACAACATCATCGCAGCGAGCAGAAAAACGAGAGCAAAGACGAAAACAATCTGCTGTTGGAACACCTGATTACCTGGCTCCAGAAATACTCCTTGGAATGGCACATGGGACAAATGCAGATTGGTGGTCAGTTGGAGTTATTCTATTTGAAATTCTTGTTGGTATTCCACCTTTTAACGCTGAACACCCACAGAAAATTTTTGACAATATCATGAATCGAGACATACCATGGCCGCAAATACCAGAGGAGATGAGCTATGAAGCCCATGACTTGATTAACAAATTACTTATTCAGAATCCACTTCAAAGACTTGGAGCCACAGGAGCTGGAGAGGTTAAGGCTCATCCCTTCTTTAAAGACATAAACTGGGATATGCTTGCAAGACAGAAGGCTGCATTCATCCCTTCAACACAAGATGAAAAAGACACTAGTTATTTTGAGTGTCGTTATGATTGGAATTCGGATGACACTCAGATTCATACAACATCGACTGACGTCAATGACATGAGTGATGCTGGAAGTGCAAGTGATTGCAGTAGCTCGGGTAGTTGTGAAGAAGATAGAGATGAAGACGAATTTGGGAGTATGGCTGACTTTGGCTCGAGGAATTCAGCCGTGAACTATTCATTCAGCAACTTCTCTTTTAAGAATTTATCTCAGCTTGCTTCAATGAACTATGATCTAATCACAAAGTGTGGCAAAGAGGAGAATTCCAATCTGTAAGAGGATTTATGAGTTGGAAGAATGCAGATTTTTTCAATTTTGATATTTTCATTCTTTAGTTTGTTATTCATTCAGTTCTTTGATCTGTTCATCAGAAAATGTAAATAATGTTTTTTATTTAGATATATGTATTAATTACCCTGAGTTATGCTTCTGTAAAAAGGGCTTCCAGTGGTGCATAGTATGGTGCAACTTAAATGTAAATACTAGTTTTTTTGTGAGACAAAAATATTTTGTATGCAAATCTTAGTCATCTAATATTTTAGGGAGCTATTTGGG

Network for GWHGAAEX002116

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	584	872	1.60E-63

Protein Sequence

>GWHPAAEX002116
MEGARRVVFDAVKEMQSPRFRAIMRATSGRRKRSPIDVKSFSHELSSKGASSLPFRKLRGLSSPEDVMVVIKSKFKHLKEEVNAELGVFAGDLVGILDKTTEERPEWRELIEDLLVISQKCAEMSPDEFWIKCEGIVQNLDDRRQELPMGTLKQVHTRILFILTRCTRLVQFQKEGAYGEEEHALGLHQFSDLGFYPDQTDSGQALKNQITAKDIMEKLMRAKIQEKRLKLSPTSRDRISSWKKLPSAAEKNQKKGGEEDTASRLKKAPSLQGQEKAELVFDEKVEAFKTSEKPTKCSGDTTIQGERPDGILDGKKVMICRICDFEIPTMHAEGHFKVCNIADRCDCKGLTVDERLLRIAEVLEKIIDQCNPKEREDVSKARHSCQIGEFHEPSFTRNNYCHSTDIGQLLPNSSTVSDIDILGSSAGMHDPGILASSSGSISPQSPLVTPRISQLNLLLIVKSLVLELENFQQIESLLIIVRSIESIKNCDYNSLENLSSYLERLNAVIGNRTVDGLIIETFGKCIEKLLQEKFIQLCGQINDGDKDTYVDEDAYVESDSGGRSSRTSPLSTKIKDRTSIEDFEIIKPISRGAFGRVFLAKKRITGDLFAIKVLKKADMIRKNAVDSILAERNILISVRNPFVVRFYYSFTSRENLYLVMEYLNGGDLYSLLRNLGCLGEEMARLYTAELVLALEYLHSLNVIHRDLKPDNLLIARDGHIKLTDFGLSKVGLISSTDDLSGPDVSSSVILDFDRTTSSQRAEKREQRRKQSAVGTPDYLAPEILLGMAHGTNADWWSVGVILFEILVGIPPFNAEHPQKIFDNIMNRDIPWPQIPEEMSYEAHDLINKLLIQNPLQRLGATGAGEVKAHPFFKDINWDMLARQKAAFIPSTQDEKDTSYFECRYDWNSDDTQIHTTSTDVNDMSDAGSASDCSSSGSCEEDRDEDEFGSMADFGSRNSAVNYSFSNFSFKNLSQLASMNYDLITKCGKEENSNL

Gene family

Gene family	subfamily
Protein Kinases Family	AGC_MAST

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0005524	Molecular Function	ATP binding
GO:0004674	Molecular Function	protein serine/threonine kinase activity
GO:0004672	Molecular Function	protein kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.810
SRP064423	SRR2545915	Juvenile tuber	6.020
SRP108465	SRR5643513	five period of Gastrodia elata	3.190
	SRR5643514	five period of Gastrodia elata	3.290
	SRR5643515	five period of Gastrodia elata	3.400
	SRR5643524	five period of Gastrodia elata	2.930
	SRR5643525	five period of Gastrodia elata	6.780
	SRR5643528	five period of Gastrodia elata	5.950
	SRR5643658	five period of Gastrodia elata	4.650
	SRR5643659	five period of Gastrodia elata	3.560
	SRR5643660	five period of Gastrodia elata	3.180
	SRR5643661	five period of Gastrodia elata	3.540
	SRR5643662	five period of Gastrodia elata	3.550
	SRR5643663	five period of Gastrodia elata	3.590
	SRR5643664	five period of Gastrodia elata	4.540
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.410
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.270
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.880
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.990
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.500
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.600
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.660
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.860
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.990
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.640
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.360
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.360
SRP279888	Gastro	Gastrodia elata tuber	3.10
	Juven	Juvenile tuber	3.38
	Mother_Gastro	Mother tuber of Gastrodia elata	5.13
	Mother_Juven	Mother tuber of Juvenile	6.46