Detail information of GWHGAAEX002120/evm.TU.scaffold_115.147


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|32474293|ref|NP_867287.1|2.00E-1043-dehydroquinate dehydratase / shikimate 5-dehydrogenase precursor [Rhodopirellula baltica SH 1]
KOGKOG06920Pentafunctional AROM protein
nrgi|695077850|ref|XP_009386288.1|0PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q9SQT8|DHQSD_ARATH0Shikimate dehydrogenase (Precursor)
trEMBLtr|M0TEF6|M0TEF6_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P03660_001}
TAIRAT3G063500dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000011631899383264676+
Transcript Sequence

Network for GWHGAAEX002120

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01487.14DHquinase_I82254.70E-66
PF08501.10Shikimate_dh_N2393191.90E-24
PF01488.19Shikimate_DH3584303.00E-10
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K13832aroDE, DHQ-SDH Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
Biosynthesis of amino acidsmap01230
Tryptophan metabolismmap00380

Gene Ontology

GO term OntologyName
GO:0019632Biological Processshikimate metabolic process
GO:0055114Biological Processoxidation-reduction process
GO:0003824Molecular Functioncatalytic activity
GO:0003855Molecular Function3-dehydroquinate dehydratase activity
GO:0050661Molecular FunctionNADP binding
GO:0004764Molecular Functionshikimate 3-dehydrogenase (NADP+) activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms14.180
SRR2545915Juvenile tuber11.430
SRP108465SRR5643513five period of Gastrodia elata18.260
SRR5643514five period of Gastrodia elata23.600
SRR5643515five period of Gastrodia elata21.120
SRR5643524five period of Gastrodia elata24.960
SRR5643525five period of Gastrodia elata28.930
SRR5643528five period of Gastrodia elata28.370
SRR5643658five period of Gastrodia elata32.180
SRR5643659five period of Gastrodia elata16.640
SRR5643660five period of Gastrodia elata13.580
SRR5643661five period of Gastrodia elata16.420
SRR5643662five period of Gastrodia elata14.890
SRR5643663five period of Gastrodia elata16.060
SRR5643664five period of Gastrodia elata15.420
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_113.000
SRR6049655Rhizomagastrodiae_C368-T10_good_118.940
SRR6049656Rhizomagastrodiae_C368-T07_good_114.810
SRR6049657Rhizomagastrodiae_C368-T07_good_111.580
SRR6049658Rhizomagastrodiae_C368-T04_good_110.140
SRR6049659Rhizomagastrodiae_C368-T04_good_17.230
SRR6049660Rhizomagastrodiae_C368-T01_good_111.190
SRR6049661Rhizomagastrodiae_C368-T04_good_110.660
SRR6049662Rhizomagastrodiae_C368-T01_good_118.850
SRR6049663Rhizomagastrodiae_C368-T01_good_114.530
SRR6049664Rhizomagastrodiae_C368-T10_good_121.740
SRR6049665Rhizomagastrodiae_C368-T10_good_121.740
SRP279888GastroGastrodia elata tuber 14.68
JuvenJuvenile tuber17.61
Mother_GastroMother tuber of Gastrodia elata 20.36
Mother_JuvenMother tuber of Juvenile 21.43