Gene detail

Detail information of GWHGAAEX002121/evm.TU.scaffold_116.1

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4198	2.00E-34	RNA-binding Ran Zn-finger protein and related proteins
nr	gi\|672137640\|ref\|XP_008792549.1\|	1.56E-58	PREDICTED: zinc finger protein VAR3, chloroplastic-like [Phoenix dactylifera]
Swissprot	tr\|Q8S9K3\|VAR3_ARATH	7.00E-35	Zinc finger protein VAR3, chloroplastic (Precursor)
trEMBL	tr\|B4FXW9\|B4FXW9_MAIZE	2.00E-46	Uncharacterized protein {ECO:0000313\|EMBL:ACF86962.1}
trEMBL	tr\|B4FXW9\|B4FXW9_MAIZE	1.00E-09	Uncharacterized protein {ECO:0000313\|EMBL:ACF86962.1}
TAIR	AT5G17790	2.00E-34	zinc finger (Ran-binding) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000112	23914	55323	+

Transcript Sequence
>GWHTAAEX002121 TGATAAAGTCTTCAATTTATCGGTCATCTAGGGTTTTTAGCCATTCATAACCATATCTTCCATAACCGTTGTCCGCCGTAATTCCGCTCGATGCCTGTCGGAATTAAGCTTAGTGCTCTCCTCTCTACCTTTTCCCCCCTCCGTTCTTTCACTGTGCGTCGCCTTACTCGTAATTCTGCTTTTTCTTTCTCGGCATTTTATTCCGCAGCGGCCTTTTATGGCCCTCTTCACTCTGCCTTCATTCGCCCGAAGCTCATGTTGTGGAGCGGAGCAACAAAAAATACTCATTCGGATGCAGTGTTTAACGAATTGCGGGGCGATGCATCCGTCTCGTTCCCGGGCACCGCCAATTCGCATTCATGGGCAGAGTGGTCTAAGCTTGCCAACTTGTTGGTAGAGAAAGGTTATTCATCTCGGTGCATTGCATCCGGTGATGACGATGATTCTTTTTTGGGGGATGGGGAGTTACCGGAGGAGTTTTTGAAGGCTGCAATAGCTTGTCTTGGCTTTGCAAGGAACCGGCCGGATATATTAAGGCTTTTTTCCAAGAAGAATGTAGAGGTGGTTGTGCTGAATGGGTCACCATTTTTGTTCAAGAACGGGGAGAATTCAGCTAGAAGGATGAAAATTTTCTTAGCCGGTGTGGAAGGCAATGAGTCTCAAAACAAGAAGGCTGAAACTGTTGACATCATGCGATATCTCTTGAGCTATGTTCATGGTTCTGTGTCTTCAGCAGATGATAACACCTTGTCTTCATCAGATTGCAATAATTTGAAATCTGAGGACTCTGTTGAAAGATCTGTGCGGAAATTGTTGTGCGAACTATTTAATTTAGCTGGAACTATCTGGAAACCAAAATCAGTAGATGCAACTTCAACAGAATTTCACTTGAACAACGAGCAGTTATCTGGGCATCCTTGGCAAAATACTGAAATGAGAAGTCGTGATTCGTGCTACCCAAAGAGTCCAGGTCAATTATCACCTGTATCAAAAAATCAATCAAATGCTTTGAGTAACCTTTCTGATAAAGCATACGCAGAGAACATGGACACACAGACACAGTGTTGTGAGGAGACCCCTCTATCACATATCGGAAGTAGAAACACTCCAAAATGTGAATTTATTGCAAATTCTTCTCAGCCTTCCGCTAGAATTTTGGAACAAAACACAGAATATTCGAGCAGGGCAGGCGGTACAGCAGATGCGCCGAATGCTGCTTATTGCTCTACAAACCCTAGTCGGCCAAATAACTCTAATGGATACAATGGGGGGCCAACCCAACTATGGACAAACAACAGTTGTACATTAAACCGTGGAATGGAACAATCCTCTCTGCCGCCTGGCAACTACAGTAAGGACGACTATGGTACTTCCTATGCAGGATACAGTGTAAATTCAACACAGCCAACTTGTCCTCTATGGAGCAACAACAATACACCTTATGGGGCGATATCAACTAAACCACCAAGTAATTCTTGGTCCAACCATTATGGTGAACCCACTCCCAATTCATATCAGCCATCCCTTAACTATCTTGGTAACCACAATACTCAATATGATCATACTGGATACGTTTCTGGATTCACTTCCAATTCATCTCAGCCATCCAACGGCTCAAGGAACACCTACCGTACTTCTCATGATGGATTCTTCGACTCCGAGCTACCTAGTTCTTCTTGGAATGATAGGAATACGTCTTATAATGCATCCACAGCATATCCACCTCAGCCACCCCAGGGCTCATGGAACAAGTTCAATGGTGAGGATGATACGAAATCAACCCAACCATCGACCAACAACAATCGGAGTATCAACTATTCATCCTTTGTGGGGCCAATTACGAATTCATTTCAGCATCTTGCCAGAGCTTCTAATTCGTATACAAGTCAATGGGACAACAATGCCACTCGATATGGTGATGGGTTTAGTGCAGATTCTTATAGCAGATATCCTGTTAATTCAAACCCACAGTTCAGTAACATTGACACTTCTTATACCAGTGTTTCTGCAAACACAGCTCAGCTATCAAGTAGTGAAAATTTGAGCAGTGGAGTACCTTCTCAGTCCCAGAATATGAATGGTAATAATGGTTATTCAGTTAAGAGCTTGGAAGGATCTTGCGTGAAAGAGCCTGATCCATTGGACATGTCTGAAGAAGCGAAGGCTGAGAGATGGTTTCGCCGGGCTGCTCAAATAAAAGATATCTCAGAACTCAGCCAGATACCTGATGAAGATTTCCCTCAAATTATGCCGATGAGGAAAGGAGTGAACAGGTTTGTCGTCAGCAAGAGGAAGACTCCTCTTGAAAGGAGACTGGCATCACAGCAATACAAAAGAAGTTTACCTGTTGCTAGTTTTGAACCTGAAAACGAGCCAACAGCTGGAGGTAATGAAAATTAATTTTGATTGTGTTGGCCACATAATCTTAAGGCGTGTTTACATATTTCCTTTGAATGCGCTAATTGACTTGGGAATATGAGAAACTTGGACAACTTTTGAAATTTGGACCAAACCGGTTGGTTTTATTGGTATAAGCATATGAATCAAACTGTGGTTTGATCTTGATTTATCGATTCCATCCCTTGTCAAGCAACATGAATTTGTAGAGAATATTGAGAAGGAGATGATAAGAGTTATAAAGAATAGTAGATATTTTTTTATTATTACATGCAACATTTCTTTTCTTATATATAGA

Network for GWHGAAEX002121

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	59.690
SRP064423	SRR2545915	Juvenile tuber	40.560
SRP108465	SRR5643513	five period of Gastrodia elata	16.730
	SRR5643514	five period of Gastrodia elata	17.920
	SRR5643515	five period of Gastrodia elata	16.950
	SRR5643524	five period of Gastrodia elata	16.250
	SRR5643525	five period of Gastrodia elata	17.610
	SRR5643528	five period of Gastrodia elata	16.840
	SRR5643658	five period of Gastrodia elata	21.480
	SRR5643659	five period of Gastrodia elata	22.840
	SRR5643660	five period of Gastrodia elata	25.770
	SRR5643661	five period of Gastrodia elata	20.370
	SRR5643662	five period of Gastrodia elata	16.990
	SRR5643663	five period of Gastrodia elata	19.370
	SRR5643664	five period of Gastrodia elata	18.490
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	23.770
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	27.240
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	22.400
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	28.010
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	23.120
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	25.610
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	27.480
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	26.780
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	19.470
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	22.740
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	22.640
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	22.640
SRP279888	Gastro	Gastrodia elata tuber	24.59
	Juven	Juvenile tuber	31.78
	Mother_Gastro	Mother tuber of Gastrodia elata	17.97
	Mother_Juven	Mother tuber of Juvenile	20.64