Gene detail

Detail information of GWHGAAEX002125/evm.TU.scaffold_116.9

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1356	9.00E-167	Putative transcription factor 5qNCA, contains JmjC domain
nr	gi\|359489580\|ref\|XP_002263925.2\|	0	PREDICTED: lysine-specific demethylase JMJ25 [Vitis vinifera]
Swissprot	tr\|Q9SSE9\|JMJ25_ARATH	8.00E-81	Lysine-specific demethylase JMJ25
trEMBL	tr\|F6I6E8\|F6I6E8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB62544.1}
TAIR	AT4G00990	9.00E-167	Transcription factor jumonji (jmjC) domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000112	585223	628388	-

Transcript Sequence
>GWHTAAEX002125 ATGAATTTTCCACCGTCTAATCGGTGCGTTATAAAGGAGGGTGGCTATCAATGCATGGAGACGGTGGCGCTTGGAAGGCGCATCTGTATGAAGCACGCCTTAGAATTGAAGCGCCGGGAAGAGAGAAAGAGGGAGAGGAATCCCCCTGACGGAGAAGAGGGCAGCGCTTCCTCTGGCCCATTCCGGAAGAAGATGCGGGTACCGTCGGTGGAGATAAGGAAGACGAAGTTTTTTGGCCGATTGAAAGAGAGGGAGGGTGAGCGGAACGAGGAGGATGATGCGGAGGAGTTGGTGAAGAAGAACGGCGCGGAATCCCTTACCAGGGGGGTGATTAGGAAAGAGAAGAGAGAGGCGAACGGTTTGTTGGCGTTCTACGATATTAATAAGAGGAAATCGAATTCGGATGCTGGCAATGAGCCAGCGGCAAAGAGGAAAATTGGAGACAAGAAGAGGATTTTTGGGGAGGAAGTGAAGGAACCTGCAAGGTTGAATAGGAATTCAAATGGCTCAAGTAGGCTACAGAAGAGTTCTTGCGTTGGAAGGAAGCAAATATCTCTGTCATCTAAGGATATTGGATGTGGGTCAACGAAAGGACTGTCTACTGATACCACCTCCCTGGGCATTGAAAAGAAGCGCTTGATGTGCCACCAATGTATGCACAGCTTTGAGAAAGATGTTGTAGTTTGCTCTAATTGTAATATCAAGCGATATTGCTTTGCCTGTCTTGCCAAATGGTATCCTGAACAAACCAAGGAAGATATTGAAGTTGCTTGCCCATTTTGTCGTGGTAACTGCAACTGTAAAGCATGTTTGCGTGTTTTCCTTGATTTTAAGTTCAGCACAGAAGGGTTGGATGAGACGGCCAGATTGCAACAATTGCTGTATATGTTGCGTAGAGCCTTACCAATTCTTAGACTCATAGATAAGGAACATACGTCAGAGATTGAAATTGAATCAAGAATTCAAAAAATTAAATCAGATGCTGTGGTTGTACCAAGGACTAAACTAGACAAGGAGGAACGTATTTATTGTGATTGTTGCAGTACTTCTGTTGTTGATTTCCATCGAACTTGTGAGAAATGTTCCTTTGACCTTTGTCTTGCATGCTGCCGAGAAATACGTGAAGGTCATCAACCTGGTGTTGAAAATTCTGATTGTCATCATAGTCCTTTCCTTGGACAAAACATGATTGCAAGAAATGAGCTACCACCTAAAAAATTTGGCTGGCAGGGCCCAAATGCATTTAGAAATAGCAATAAATTCATTGATAGAACTTGTTCTTCTGATTGGAGGGTGAACTGTGATGGCAGCATTCCATGCCCTCCTAAAAGCCATGGTGGATGCGGCAATGGTATCCTTGCATTAAAGCGTACCTTTAAGTTTAATTGGGTGGTAAAGCTCATCGGTAATGCAGAGAGGTTAACAAATGGTTTTAACTTTGTGGATGACAGTGCATCCGAAACTTGTTCATTATGCCTTGATTTGTACTCATCCACCAGAGTTGATAAAAATACTTTCGCCCTGCGTAGGGCGGCATCTCGGGAAAGTAATCATGATAACTTTATATATTGCCCCCATGCAAACGAGTTGGGACATGATGAATATGCACATTTTCAGAAGCATTGGAGAATGGGTGAACCAGTGATTGTCAGAGGTGTTCTTGAGAAAACAACTGGTCTTAGTTGGGACCCCATGGTAATGTGGAGGGCTCTTCGAGAAAAAAAAATAAAAAAATTTAAAGATGACAGTTATGCTGTTAAGGCTATTGATTGTTTAGACTGGTGTGAGGTTGAAATTAATATTCACAAGTTTTTTAAAGGCTACATGGAAGGTCGAATTCATATGAATGGTTGGCCAGAGATGCTGAAACTGAAAGACTGGCCTCCATCTAGCTTATTTGCAGAGCGTTTGCCAAGGCACTGTGCTGAGTTTATAGCTGCTCTTCCATTTAAGGAGTACACTCATCCAATGAATGGTGCACTTAATTTTGCTTCACGGATCCCTGAGGGACATCCCAGCCCTGATCTGGGCCCCAAAACATACATTGCTTATGGGATCCAAGATGAACTTGTCAGAGGTGATTCGGTGACAAAACTGCACTGTGATATATCTGATGCGGTAAATGTGTTGACACATACAACGAAGGTGGCAATGCCTACTTGGAACGCCGAACGGATTAAGGAGTTACAAAAGAAATATGATAGAGATGATTGTGAGGAACTTTATAAAGTTGTAGATAAAGCTGCAACTGAAATTGTGGAAGGAGAAAATATAGAATCAACTAAACATTCTCCTATTTTAAATTCTAGGAGTACTGATTTGGTTATGAAGATAGGGATGCCCTCTGTTGCAAGACAAGTTAAAGATTTGGGGGATGCTAGCATTAAACAAGCAGAAATGATCCAAGTTGATGGAAATGAAAAGATGCCACGGTGCTCTCCTGTTAGTAATATGAATATGATTGCAACAGAGAAAGAAAAGAAGGAAAGTCCGGAGCTGGTGTATGGTTTTGAGGAACGTCCCAATGATGTAGAAAATCAATTTCCAAATTATTTAAATGATTTCAAGAATAATGGAGGCTTCATAGGTCTCTCTTTTTCAGAGTTCAACTTTTGCAAGGATACTGAATTAACAGGCAAGCATGTATGTGCTGAAAAGTCGGTCTCCCTTGGTTTTGAAAAATCTTCTGAGATGGATACTCTGGTGAATGAAGAACATTGTACTTCTGCTACAGTGAAAGCAAAAACACCTGTAAAAAGTAACTTGCATCATAAATGCTTAGAAGTTCATGGTGGTGCTGTTTGGGACATATTTCGAAGGGAAGATGTGCCAAAGCTTATTGAGTATCTATGGAGACATTGGAAAGAGTTTCGTCATATTAACAATCTTCCTCTTAACTCTATTGTTCATCCCATCCATGACCAGACACTTTATTTGAATGAGAGGCATAAGAAACAACTTAAAGATGAATTCAATATAGAGCCTTGGACATTTGAACAAAATCTTGGTGAGGCAGTTTTGATCCCAGCAGGATGTCCTCATCAAGTCAGAAACAGACAGTCTTGTATCAAAGTTGCCCTTGACTTTGTATCTCCTGAAAATATTGGAGAATGTGTCCGACTGACTGATGAATTCCGCTTGCTTCCAGCATCTCATCGGGCAAAAGAGGATAAATTAGAGGTTAAAAAAATGGTCCTTTTTGCTGTCAGTTCTGCCGTAAGAGAGGCAATGGAACTATCCTCAAAAGTACGAAACTAA

Network for GWHGAAEX002125

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10497.8	zf-4CXXC_R1	211	272	2.70E-06
PF02373.21	JmjC	933	1029	1.30E-13

Protein Sequence

>GWHPAAEX002125
MNFPPSNRCVIKEGGYQCMETVALGRRICMKHALELKRREERKRERNPPDGEEGSASSGPFRKKMRVPSVEIRKTKFFGRLKEREGERNEEDDAEELVKKNGAESLTRGVIRKEKREANGLLAFYDINKRKSNSDAGNEPAAKRKIGDKKRIFGEEVKEPARLNRNSNGSSRLQKSSCVGRKQISLSSKDIGCGSTKGLSTDTTSLGIEKKRLMCHQCMHSFEKDVVVCSNCNIKRYCFACLAKWYPEQTKEDIEVACPFCRGNCNCKACLRVFLDFKFSTEGLDETARLQQLLYMLRRALPILRLIDKEHTSEIEIESRIQKIKSDAVVVPRTKLDKEERIYCDCCSTSVVDFHRTCEKCSFDLCLACCREIREGHQPGVENSDCHHSPFLGQNMIARNELPPKKFGWQGPNAFRNSNKFIDRTCSSDWRVNCDGSIPCPPKSHGGCGNGILALKRTFKFNWVVKLIGNAERLTNGFNFVDDSASETCSLCLDLYSSTRVDKNTFALRRAASRESNHDNFIYCPHANELGHDEYAHFQKHWRMGEPVIVRGVLEKTTGLSWDPMVMWRALREKKIKKFKDDSYAVKAIDCLDWCEVEINIHKFFKGYMEGRIHMNGWPEMLKLKDWPPSSLFAERLPRHCAEFIAALPFKEYTHPMNGALNFASRIPEGHPSPDLGPKTYIAYGIQDELVRGDSVTKLHCDISDAVNVLTHTTKVAMPTWNAERIKELQKKYDRDDCEELYKVVDKAATEIVEGENIESTKHSPILNSRSTDLVMKIGMPSVARQVKDLGDASIKQAEMIQVDGNEKMPRCSPVSNMNMIATEKEKKESPELVYGFEERPNDVENQFPNYLNDFKNNGGFIGLSFSEFNFCKDTELTGKHVCAEKSVSLGFEKSSEMDTLVNEEHCTSATVKAKTPVKSNLHHKCLEVHGGAVWDIFRREDVPKLIEYLWRHWKEFRHINNLPLNSIVHPIHDQTLYLNERHKKQLKDEFNIEPWTFEQNLGEAVLIPAGCPHQVRNRQSCIKVALDFVSPENIGECVRLTDEFRLLPASHRAKEDKLEVKKMVLFAVSSAVREAMELSSKVRN

Gene family

Gene family	subfamily
Transcription Factors Family	Jumonji

KEGG pathway

KO	Enzyme	pathway	mapID
K15601	KDM3	Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	36.900
SRP064423	SRR2545915	Juvenile tuber	36.240
SRP108465	SRR5643513	five period of Gastrodia elata	29.250
	SRR5643514	five period of Gastrodia elata	28.100
	SRR5643515	five period of Gastrodia elata	27.280
	SRR5643524	five period of Gastrodia elata	31.540
	SRR5643525	five period of Gastrodia elata	23.780
	SRR5643528	five period of Gastrodia elata	26.330
	SRR5643658	five period of Gastrodia elata	24.420
	SRR5643659	five period of Gastrodia elata	22.510
	SRR5643660	five period of Gastrodia elata	21.750
	SRR5643661	five period of Gastrodia elata	21.540
	SRR5643662	five period of Gastrodia elata	21.280
	SRR5643663	five period of Gastrodia elata	22.040
	SRR5643664	five period of Gastrodia elata	23.000
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	26.660
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	21.460
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	30.120
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	25.200
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	26.440
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	30.830
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	29.690
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	28.160
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	32.610
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	33.430
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	25.030
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	25.030
SRP279888	Gastro	Gastrodia elata tuber	25.84
	Juven	Juvenile tuber	81.47
	Mother_Gastro	Mother tuber of Gastrodia elata	47.92
	Mother_Juven	Mother tuber of Juvenile	65.11