Detail information of GWHGAAEX002129/evm.TU.scaffold_116.15
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|313126414|ref|YP_004036684.1| | 7.00E-32 | cytochrome p450 [Halogeometricum borinquense DSM 11551] |
| KOG | KOG0156 | 4.00E-130 | Cytochrome P450 CYP2 subfamily |
| nr | gi|743763118|ref|XP_010911323.1| | 4.11E-162 | PREDICTED: cytochrome P450 71A1-like [Elaeis guineensis] |
| Swissprot | tr|P24465|C71A1_PERAE | 8.00E-137 | Cytochrome P450 71A1 |
| trEMBL | tr|I6LM44|I6LM44_ELAGV | 5.00E-150 | P450 {ECO:0000313|EMBL:ADM88550.1} |
| TAIR | AT3G26300 | 4.00E-130 | cytochrome P450, family 71, subfamily B, polypeptide 34 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000112 | 775715 | 816338 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002129
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00067.21 | p450 | 32 | 499 | 7.60E-96 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Cytochrome P450 Family | CYP71B34 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016705 | Molecular Function | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
| GO:0005506 | Molecular Function | iron ion binding |
| GO:0020037 | Molecular Function | heme binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.410 |
| SRR2545915 | Juvenile tuber | 24.870 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 31.070 |
| SRR5643514 | five period of Gastrodia elata | 48.260 | |
| SRR5643515 | five period of Gastrodia elata | 37.810 | |
| SRR5643524 | five period of Gastrodia elata | 48.000 | |
| SRR5643525 | five period of Gastrodia elata | 10.510 | |
| SRR5643528 | five period of Gastrodia elata | 11.290 | |
| SRR5643658 | five period of Gastrodia elata | 10.310 | |
| SRR5643659 | five period of Gastrodia elata | 48.230 | |
| SRR5643660 | five period of Gastrodia elata | 47.810 | |
| SRR5643661 | five period of Gastrodia elata | 40.150 | |
| SRR5643662 | five period of Gastrodia elata | 43.180 | |
| SRR5643663 | five period of Gastrodia elata | 42.760 | |
| SRR5643664 | five period of Gastrodia elata | 31.340 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 40.910 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 45.110 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 39.570 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 38.530 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 23.740 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 20.220 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 28.830 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 28.120 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 20.600 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 18.070 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 33.750 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 33.750 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 30.27 |
| Juven | Juvenile tuber | 160.89 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 43.10 | |
| Mother_Juven | Mother tuber of Juvenile | 53.06 |