Detail information of GWHGAAEX002132/evm.TU.scaffold_116.22
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3074 | 1.00E-36 | Transcriptional regulator of the PUR family, single-stranded-DNA-binding |
| nr | gi|743789320|ref|XP_010922876.1| | 3.06E-96 | PREDICTED: transcription factor Pur-alpha 1-like [Elaeis guineensis] |
| Swissprot | tr|Q9SKZ1|PUR_ARATH | 4.00E-74 | Transcription factor Pur-alpha 1 |
| trEMBL | tr|M0SKF4|M0SKF4_MUSAM | 2.00E-90 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P02370_001} |
| trEMBL | tr|M0SKF4|M0SKF4_MUSAM | 5.00E-06 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P02370_001} |
| TAIR | AT2G32080 | 1.00E-36 | purin-rich alpha 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000112 | 1090024 | 1105807 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002132
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04845.12 | PurA | 101 | 157 | 4.70E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0032422 | Molecular Function | purine-rich negative regulatory element binding |
| GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 116.200 |
| SRR2545915 | Juvenile tuber | 166.050 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 34.960 |
| SRR5643514 | five period of Gastrodia elata | 46.030 | |
| SRR5643515 | five period of Gastrodia elata | 38.790 | |
| SRR5643524 | five period of Gastrodia elata | 41.020 | |
| SRR5643525 | five period of Gastrodia elata | 171.100 | |
| SRR5643528 | five period of Gastrodia elata | 137.460 | |
| SRR5643658 | five period of Gastrodia elata | 187.200 | |
| SRR5643659 | five period of Gastrodia elata | 43.350 | |
| SRR5643660 | five period of Gastrodia elata | 46.080 | |
| SRR5643661 | five period of Gastrodia elata | 41.840 | |
| SRR5643662 | five period of Gastrodia elata | 44.630 | |
| SRR5643663 | five period of Gastrodia elata | 55.060 | |
| SRR5643664 | five period of Gastrodia elata | 53.470 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 55.960 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 31.650 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 51.140 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 41.580 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 59.730 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 59.720 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 45.140 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 60.520 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 55.530 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 55.390 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 56.650 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 56.650 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 70.20 |
| Juven | Juvenile tuber | 25.60 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 85.53 | |
| Mother_Juven | Mother tuber of Juvenile | 26.35 |