Gene detail

Detail information of GWHGAAEX002138/evm.TU.scaffold_116.34

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|220917178\|ref\|YP_002492482.1\|	2.00E-53	HAD superfamily hydrolase [Anaeromyxobacter dehalogenans 2CP-1]
KOG	KOG2470	0	Similar to IMP-GMP specific 5'-nucleotidase
nr	gi\|743767568\|ref\|XP_010914051.1\|	0	PREDICTED: 5'-nucleotidase domain-containing protein DDB_G0275467 isoform X2 [Elaeis guineensis]
trEMBL	tr\|A0A067F4M5\|A0A067F4M5_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO62339.1}
TAIR	AT2G23890	0	HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000112	1672530	1732125	-

Transcript Sequence
>GWHTAAEX002138 TTAACCTCCCGCTCATTGCTTACCTCCATTTCCATCTCTCCAACTCACTCTTCTCTACACTCGTACACCCCATCATCGTCACAGCTTTGGATTCTGATTAGTTTTCCTTTTGCCGCTGATTATTGGGATCGTAGTTCTCGAACGCAGCACAGCATCATTTTACGCCTTTTTATCTCTTCTCGGAAATGAGAAGCATCCGCCCCCGTCTTCTCTACACGATCCTATCGCTTCCAGTTAGAACCGCTTTATCGGAGGGAAACAAACTCAGAGAAAGCTTTCTCTGGTCAAATGCAACTTTCTATGCCGAAGTAACCCACAGACGATTTTCTGGGACTGTCACGCCTGACTTGGTCTCCACTACCCTCGCAAATGAGATCGAAAAAATTCGAATCGAGTACGAGGAAGCCAAGCGGTTCTTCCTTGAGATTCCTGATGAACTAAATAAATTGCCTAAGATGAATCCTGAAGGTATCTACGTGAATAAGAATCTCAGGCTTGACAGAATACAAGTGTATGGTTTTGATTACGACTATACGCTGGCTCATTACTCTCAGAATTTGCAAAGCTTGACATATGATCTTGCCAAGGAGTTTCTTGTTAATGAGCTGAAGTATCCTGAGAGCTGCTTGCAATTTCATTATGATCCATCTTTTCCCATCAGAGGGCTTTACTACGACAAGCTGAAAGGTTGTCTTATGAAGCTTGACTTTTTTGGTTCCATAGAGCATGATGGTTGTTTCCTTGGACGTCAAAAGGTTAGCAAAGAAAATGTTATAAAGACGTATGGTTCACGACATATTGGCAGGGATCATGCAAGTAGACTGGTATGCCTGATGGATTTCTTCTGTTTTAGTGAGGTATGTCTTCTTGCGGATATTGTTCAACATTTCTTAGATGCTAATTTGGACTATGATGCTTCCTATGTATACGAGGATGTTGCACATGCAATTCAACATGTGCATGGAAGCGGCATTCTTCATAAAAATATCCTTTCTGACCCTAAGAAGTATTTGCTGAAAAATAACCGGGTACTCAAGTTTCTAACGACACTCAAGGAAAAGGGAAAAAAACTTTTCTTACTGACCAATTCTCCATTTTATTTTGTCGATGGAGGAATGAAGTTCTTAATAGAAGATGACATCGTTTATAGAGATTCCTGGAGGGATCTCTTTGATGTTGTGATTGCTCGTGCTAATAAACCAACCTTTTACACTTCTGAACATCCCTTCAGATGCTATGATATTGATAAGGACACCTTGGCTTTTACAGCAGTTGACAGGTTTCTTCCAGGACAAGTTTATTATCATGGCTGCCTTAAATCTTTTCTTGAAATTACAAATTGGAATGGTCCTGAGGTGATATACTTTGGAGACCATCTTTTTAGTGATCTTAGAGGACCTTCAAAGGCTGGCTGGAAAACTGCTGCTATCATACATGAACTAGAGAATGAAATCCGTGTACAAAACACTAAGGATTATCGCTTTCAACAGGCAAAGTTTCACATAATACAAGAACTGCTTGGGAAACTGCACCTGGCCATGTCCACATTTGGTGATCTGAATAGCCATACTTTGCCGCTTGTGGATGAGCTCAACCAGGAAAGGAGAAACTGCCTTTTTGCGATGAAGCAGATGTTCAATGCATGTTTTGGGGCTACTTTTCTTGCGGACACTGGCCAGGAATCAGCTTTTGCTTACCATATCCATCACTATGCTGATGTGTACACCAGCAAGCCGGAGAACTTCCTCCTATATCCCACTGAAGCATGGCTTCATGTTCCATTTGATGTAAAAATAATGCCGCATCATGTTAAGGTTCCCCCAAGCTTGTTCAAGCAGCATATGAGAAGCCTTAAAGGAATTGAGAAGCATTAATTTTGTTCAGAAGGTGCCGCAGCAAGTGTAAATAATTCATTGCTAAATATTCATCAGCGGTGGAATGAGTGCTGTCAGTGTCAGTGCTCTGTAGCAAAACTATAAAATCTTACATGTTTTGCTTTCACGAAAATCTATAATGCTTCTCCAAAGATATGGGTAACAATCGCAACATTATTTTGGAGCCCATTAAATCGAAATCTTGAATTTGTACAAATTATTGCCTCATAACGAGGGAGCCTTCTTTCAAAAAAATAAATGCACCATTATCTATGAATTTTTCTGCCAATTAATTATAAACGTGTATATAAGATTTC

Network for GWHGAAEX002138

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05761.13	5_nucleotid	96	542	2.80E-141

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.080
SRP064423	SRR2545915	Juvenile tuber	3.040
SRP108465	SRR5643513	five period of Gastrodia elata	4.090
	SRR5643514	five period of Gastrodia elata	2.410
	SRR5643515	five period of Gastrodia elata	4.840
	SRR5643524	five period of Gastrodia elata	3.040
	SRR5643525	five period of Gastrodia elata	2.110
	SRR5643528	five period of Gastrodia elata	4.370
	SRR5643658	five period of Gastrodia elata	3.320
	SRR5643659	five period of Gastrodia elata	2.300
	SRR5643660	five period of Gastrodia elata	1.550
	SRR5643661	five period of Gastrodia elata	1.230
	SRR5643662	five period of Gastrodia elata	6.260
	SRR5643663	five period of Gastrodia elata	3.400
	SRR5643664	five period of Gastrodia elata	1.730
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.400
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.430
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.750
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.940
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.120
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.370
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.070
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.830
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.580
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.720
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.680
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.680
SRP279888	Gastro	Gastrodia elata tuber	2.34
	Juven	Juvenile tuber	1.71
	Mother_Gastro	Mother tuber of Gastrodia elata	3.11
	Mother_Juven	Mother tuber of Juvenile	1.39