Detail information of GWHGAAEX002139/evm.TU.scaffold_116.39


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743812144|ref|XP_010929341.1|8.28E-74PREDICTED: transcription factor bHLH35 isoform X2 [Elaeis guineensis]
Swissprottr|Q2HIV9|BH035_ARATH5.00E-62Transcription factor bHLH35
trEMBLtr|M0THY7|M0THY7_MUSAM3.00E-67Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P16000_001}
TAIRAT5G571509.00E-58basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000011219172431919190+
Transcript Sequence

Network for GWHGAAEX002139

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module3

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00010.25HLH49954.30E-11
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilybHLH

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046983Molecular Functionprotein dimerization activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms10.440
SRR2545915Juvenile tuber1.210
SRP108465SRR5643513five period of Gastrodia elata7.680
SRR5643514five period of Gastrodia elata1.570
SRR5643515five period of Gastrodia elata50.070
SRR5643524five period of Gastrodia elata5.410
SRR5643525five period of Gastrodia elata4.690
SRR5643528five period of Gastrodia elata17.970
SRR5643658five period of Gastrodia elata1.720
SRR5643659five period of Gastrodia elata23.410
SRR5643660five period of Gastrodia elata14.820
SRR5643661five period of Gastrodia elata19.460
SRR5643662five period of Gastrodia elata70.360
SRR5643663five period of Gastrodia elata28.240
SRR5643664five period of Gastrodia elata9.290
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_10.860
SRR6049655Rhizomagastrodiae_C368-T10_good_10.000
SRR6049656Rhizomagastrodiae_C368-T07_good_10.350
SRR6049657Rhizomagastrodiae_C368-T07_good_10.430
SRR6049658Rhizomagastrodiae_C368-T04_good_10.000
SRR6049659Rhizomagastrodiae_C368-T04_good_10.000
SRR6049660Rhizomagastrodiae_C368-T01_good_12.470
SRR6049661Rhizomagastrodiae_C368-T04_good_10.220
SRR6049662Rhizomagastrodiae_C368-T01_good_10.610
SRR6049663Rhizomagastrodiae_C368-T01_good_11.090
SRR6049664Rhizomagastrodiae_C368-T10_good_10.370
SRR6049665Rhizomagastrodiae_C368-T10_good_10.370
SRP279888GastroGastrodia elata tuber 4.43
JuvenJuvenile tuber0.06
Mother_GastroMother tuber of Gastrodia elata 0.43
Mother_JuvenMother tuber of Juvenile 0.34