Detail information of GWHGAAEX002145/evm.TU.scaffold_116.46
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0674 | 0 | Calreticulin |
| nr | gi|567130064|ref|XP_006392436.1| | 0 | hypothetical protein EUTSA_v10023481mg [Eutrema salsugineum] |
| Swissprot | tr|Q38858|CALR2_ARATH | 0 | Calreticulin-2 (Precursor) |
| trEMBL | tr|V4KII7|V4KII7_EUTSA | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESQ29722.1} |
| TAIR | AT1G09210 | 0 | calreticulin 1b |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000112 | 2191644 | 2197785 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002145
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00262.17 | Calreticulin | 27 | 262 | 1.20E-57 |
| PF00262.17 | Calreticulin | 264 | 337 | 5.30E-23 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08057 | CALR | Protein processing in endoplasmic reticulum | map04141 |
| Phagosome | map04145 | ||
| Antigen processing and presentation | map04612 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006457 | Biological Process | protein folding |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005509 | Molecular Function | calcium ion binding |
| GO:0051082 | Molecular Function | unfolded protein binding |
| GO:0005783 | Cellular Component | endoplasmic reticulum |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 449.060 |
| SRR2545915 | Juvenile tuber | 472.550 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 703.880 |
| SRR5643514 | five period of Gastrodia elata | 455.150 | |
| SRR5643515 | five period of Gastrodia elata | 513.290 | |
| SRR5643524 | five period of Gastrodia elata | 650.950 | |
| SRR5643525 | five period of Gastrodia elata | 270.480 | |
| SRR5643528 | five period of Gastrodia elata | 721.210 | |
| SRR5643658 | five period of Gastrodia elata | 311.110 | |
| SRR5643659 | five period of Gastrodia elata | 706.560 | |
| SRR5643660 | five period of Gastrodia elata | 710.590 | |
| SRR5643661 | five period of Gastrodia elata | 715.960 | |
| SRR5643662 | five period of Gastrodia elata | 714.680 | |
| SRR5643663 | five period of Gastrodia elata | 543.170 | |
| SRR5643664 | five period of Gastrodia elata | 477.220 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 540.300 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 828.070 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 719.850 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 419.140 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 459.350 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 322.410 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 352.320 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 467.470 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 861.800 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 680.090 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1045.560 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1045.560 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 510.87 |
| Juven | Juvenile tuber | 173.80 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 434.21 | |
| Mother_Juven | Mother tuber of Juvenile | 627.23 |